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To identify common upregulated or downregulated genes, you would need to test for media condition contrasts for each cell type separately, …
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Anna
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Hi James,
Apologies (re: posting in the wrong place).
Thank you so much for your response, that was exactly the help I needed.
Best,
A…
Comment: ANOVA like approach of edgeR
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I am comparing the expression patterns of different tissue cell lines (CellType) under five distinct media conditions (Status). Since the c…
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It is almost always better to retain the full observed data, if the statistical software is able to model the repeated measures. This is a…
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The simplest way to handle contrasts with an interaction term is to create a new variable. Lets consider a simpler case with variables `Se…
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