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rmysql
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Sequencing database tool in R: tracking Sanger and NGS of large-scale directed evolution projects
rmysql
fastq
seqinr
ngs
sangerseqr
6.7 years ago
JoeMG
• 0
0
votes
1
reply
994
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Update package permission Everytime
software error
R
bioconductor
rmysql
6.7 years ago
vivekr
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0
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5
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2.2k
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error when using ensembldb with a MySQL server
ensembldb
rmysql
updated 7.0 years ago by
James W. MacDonald
67k • written 7.0 years ago by
Didi
▴ 10
0
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0
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1.3k
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Job:
Full Time Bioinformatics Software Developer
php
javascript
rmysql
R
Job
7.9 years ago • updated 7.7 years ago
Luo Weijun
★ 1.6k
2
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2
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2.3k
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Anybody know if this will change: package ‘RMySQL’ is not available (for R version 3.1.2)
rmysql
R version 3.1.2
3.1.2
package updates
10.1 years ago
milorobertsmith
• 0
8
votes
7
replies
2.0k
views
RMySQL availiability with Bioconductor 3.0
Install
RMySQL
Windows
updated 10.3 years ago by
Martin Morgan
25k • written 10.3 years ago by
Panagiotis Moulos
▴ 30
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Comment: Identifying potentially associated gene set to drug response using GSVA
by
coolmathforkids2
• 0
It is always helpful to see clear explanations and solutions for bioconductor related challenges. Posts like this make the community a valu…
Comment: minfi latest update for EPIC V2 chip
by
macdonaldfrench7286566
• 0
Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo. *Th…
Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
by
Gordon Smyth
52k
To compute CPM values from edgeR: ``` y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status) y <- …
Comment: edgeR + tximport: calcNormFactors and the usage of offsets
by
Gordon Smyth
52k
Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.
Comment: edgeR + tximport: calcNormFactors and the usage of offsets
by
Andre
• 0
But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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