Bioconductor Rory stark

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CHIPQC Diffbind chipseq rory stark Thomas Carroll

updated 2.6 years ago by arisarkar88 ▴ 40 • written 4.9 years ago by bioinfouser2 ▴ 10

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diffbind rory stark chip seq

updated 4.4 years ago by Rory Stark ★ 5.2k • written 4.9 years ago by bioinfouser2 ▴ 10

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diffbind Rory Stark coordinate

updated 5.0 years ago by Rory Stark ★ 5.2k • written 5.1 years ago by Guandong Shang ▴ 40

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diffbind rory stark

7.7 years ago andrew.gehrke • 0

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rory stark

8.3 years ago • updated 7.8 years ago mforoo1 • 0

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diffbind chipseq atac-seq rory stark

updated 8.0 years ago by Rory Stark ★ 5.2k • written 8.0 years ago by andrew.gehrke • 0

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Rory Stark diffbind TMM edgeR chipseq

updated 8.7 years ago by Rory Stark ★ 5.2k • written 8.9 years ago by akdess • 0

7 results • Page 1 of 1

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Answer: DESeq2 by ATpoint ★ 4.8k

Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k

Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…

Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k

The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…

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Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin

Comment: ComBat with repeated measures

Answer: Package developing and interoperation with Bioconductor

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

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