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rory stark
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Diffbind heatmap color change
diffbind
rory stark
6.7 years ago
andrew.gehrke
• 0
0
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2
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1.2k
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Diffbind analysis warning
rory stark
7.3 years ago • updated 6.9 years ago
mforoo1
• 0
1
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7
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2.7k
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loading dba.plotVolcano in DiffBind
diffbind
chipseq
atac-seq
rory stark
updated 7.1 years ago by
Rory Stark
★ 5.2k • written 7.1 years ago by
andrew.gehrke
• 0
1
vote
8
replies
1.3k
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Diffbind multiple blocking factor
diffbind
rory stark
chip seq
updated 3.5 years ago by
Rory Stark
★ 5.2k • written 4.0 years ago by
bioinfouser2
▴ 10
1
vote
2
replies
839
views
The coordinate system problem about DiffBind output
diffbind
Rory Stark
coordinate
updated 4.1 years ago by
Rory Stark
★ 5.2k • written 4.2 years ago by
Guandong Shang
▴ 40
0
votes
7
replies
1.8k
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CHIPQC error regarding BiocParallel
CHIPQC
Diffbind
chipseq
rory stark
Thomas Carroll
updated 20 months ago by
arisarkar88
▴ 40 • written 4.0 years ago by
bioinfouser2
▴ 10
0
votes
1
reply
1.9k
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DiffBind TMM normalization
Rory Stark
diffbind
TMM
edgeR
chipseq
updated 7.8 years ago by
Rory Stark
★ 5.2k • written 8.0 years ago by
akdess
• 0
7 results • Page
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Comment: Why p value inconsistent when using different number of pathway score?
by
Chris
• 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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