Bioconductor Rory stark

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diffbind rory stark

7.1 years ago andrew.gehrke • 0

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rory stark

7.7 years ago • updated 7.3 years ago mforoo1 • 0

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diffbind chipseq atac-seq rory stark

updated 7.4 years ago by Rory Stark ★ 5.2k • written 7.5 years ago by andrew.gehrke • 0

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diffbind rory stark chip seq

updated 3.9 years ago by Rory Stark ★ 5.2k • written 4.4 years ago by bioinfouser2 ▴ 10

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diffbind Rory Stark coordinate

updated 4.5 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by Guandong Shang ▴ 40

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CHIPQC Diffbind chipseq rory stark Thomas Carroll

updated 2.1 years ago by arisarkar88 ▴ 40 • written 4.4 years ago by bioinfouser2 ▴ 10

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2.1k

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Rory Stark diffbind TMM edgeR chipseq

updated 8.2 years ago by Rory Stark ★ 5.2k • written 8.4 years ago by akdess • 0

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Comment: When doing differential methylation using the sesame package, seems to only go by James W. MacDonald 67k

Oh, ok. For background, I don't use `sesame`, so this is new territory for me as well. I see why the effect size is always positive thoug…

Answer: How to read OSCA book? by Lluís Revilla Sancho ▴ 730

The OSCA book is hosted by Bioconductor here: [https://bioconductor.org/books/release/OSCA/][1]. You can just use the browser and consult…

Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by Guido Hooiveld ★ 4.1k

By using a slightly different way I get much larger numbers; both for the total number of input that could be annotated (= mapped to IDs), …

Comment: mutational signatures problems by Danyiel • 0

ty for solustion

Answer: Dealing with 0 miRNA counts in DESeq2 analysis and influence in adjusted p-value by Michael Love 42k

This is covered in the workflow (rnaseqGene). You can filter them, but no they will not negatively affect the multiple testing because o…

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Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus

Answer: clusterProfiler: BgRatio N value does not match the size of the gene universe th

Answer: object 'hdac_targets' not found

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