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CRISPRseek: searchHits() optimization
Preprocessing BSgenome safe BSgenome CRISPRseek Preprocessing BSgenome safe BSgenome
11.3 years ago Julie Zhu ★ 4.3k
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2
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Aha: different error may be a clue: RE: separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome with MEDIPS
Alignment BSgenome safe BSgenome MEDIPS Alignment BSgenome safe BSgenome MEDIPS
updated 11.9 years ago by ▴ 570 • written 11.9 years ago by ▴ 220
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separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome with MEDIPS
Alignment BSgenome safe BSgenome MEDIPS Alignment BSgenome safe BSgenome MEDIPS
updated 11.9 years ago by ▴ 570 • written 11.9 years ago by ▴ 220
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GWASTools suggestions: explicit interface for GenotypeReaders,
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updated 11.9 years ago by ▴ 890 • written 11.9 years ago by ▴ 70
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SAM for protemics - low q values
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12.2 years ago Hendrik Nolte ▴ 10
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4
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DEXSeq on two-exon genes: how to specify a formula without redundant terms
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12.5 years ago Narayanan, Manikandan NIH/NIAID [E] ▴ 60
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BitSeq: Required input for 3' bias correction on transcripts.
Transcription RNASeq safe BitSeq Transcription RNASeq safe BitSeq
12.8 years ago Peter Glaus ▴ 70
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Log transformation and left censoring
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12.8 years ago Paul Harrison ▴ 110
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BitSeq: Required input for 3' bias correction on transcripts.
RNASeq safe BitSeq RNASeq safe BitSeq
12.8 years ago Dave Gerrard ▴ 40
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2
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frma for Nimblegen arrays?
Microarray Annotation Normalization affy PROcess safe frma frmaTools Microarray affy
updated 13.0 years ago by ★ 4.3k • written 13.0 years ago by ▴ 260
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SCAN UPC probability - validation of gene expression results using UPC
hgu133a2 safe SCAN.UPC hgu133a2 safe SCAN.UPC
updated 13.0 years ago by ▴ 600 • written 13.0 years ago by ▴ 870
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SCAN UPC probability - validation of gene expression results using UPC
hgu133a2 safe hgu133a2 safe
13.0 years ago Guest User ★ 13k
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5
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frma for Nimblegen arrays?
Microarray Normalization affy PROcess safe frma Microarray Normalization affy PROcess
updated 13.0 years ago by ▴ 830 • written 13.0 years ago by ▴ 260
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flowCore 1.22.0 broken for some FCS files
Cancer safe flowCore Cancer safe flowCore
13.4 years ago Josef Spidlen ▴ 140
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dbSNP strand information
SNPlocs safe SNPlocs safe
13.7 years ago Alex Gutteridge ▴ 650
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3
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1.9k
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Strand information for dbSNP packages
SNPlocs safe SNPlocs safe
updated 13.7 years ago by ★ 6.8k • written 13.7 years ago by ▴ 650
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Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
safe BiocInstaller safe BiocInstaller
13.9 years ago Firas Swidan ▴ 50
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Fwd: Re: Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
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14.0 years ago Andrea Grilli ▴ 240
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7
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Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
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updated 14.0 years ago by ★ 8.2k • written 14.0 years ago by ▴ 50
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Can't reproduce assessment data included in affycomp package
Cancer affy affycomp PROcess safe Cancer affy affycomp PROcess safe
updated 14.4 years ago by ▴ 590 • written 14.4 years ago by ★ 2.3k
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5
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2.1k
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Combining data from different versions of Illumina HumanHT-12 v3
Normalization probe limma safe ArrayExpress Normalization probe limma safe ArrayExpress
updated 14.5 years ago by ★ 3.6k • written 14.5 years ago by ▴ 220
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0
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1.3k
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Can't reproduce assessment data included in affycomp package
Cancer affy affycomp PROcess safe Cancer affy affycomp PROcess safe
14.6 years ago Harris A. Jaffee ▴ 590
0
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0
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1.1k
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Can't reproduce assessment data included in affycomp package
Cancer affycomp PROcess safe Cancer affycomp PROcess safe
14.6 years ago Philippe Serhal ▴ 10
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1
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2.0k
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Combining data from different versions of Illumina HumanHT-12 v3
Normalization probe safe ArrayExpress Normalization probe safe ArrayExpress
updated 14.6 years ago by ★ 3.6k • written 14.6 years ago by ▴ 220
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4
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5.2k
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Bioconductor with Affymetrix Mouse Gene 1.0 ST
Annotation cdf PROcess safe Annotation cdf PROcess safe
14.6 years ago M. Emily Merrill ▴ 20
0
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3
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1.4k
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Package xps - Problem accessing README file
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updated 15.0 years ago by ★ 3.9k • written 15.0 years ago by ★ 8.2k
0
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851
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Now you can smoke anywhere you want!
Cancer safe Cancer safe
16.2 years ago inLife E-Cigarettes ▴ 10
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873
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You Don't Have to Quit Smoking. New Technology!
Cancer safe Cancer safe
16.2 years ago inLife E-Cigarettes ▴ 10
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0
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970
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biomaRt - current devel version of biomaRt+RCurl don't work
biomaRt safe biomaRt safe
16.5 years ago Patrick Aboyoun ★ 1.6k
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RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
Cancer RdbiPgSQL safe Cancer RdbiPgSQL safe
16.5 years ago Ben Madin ▴ 20
0
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2
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1.2k
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RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
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updated 16.6 years ago by 16k • written 16.6 years ago by ▴ 20
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0
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891
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!SPAM: Sale Offer:- ViagraCializ Pills at LowestPrices on net! $1.31/tab, find out more ewlelk 6qu
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17.0 years ago Anisa Gracie ▴ 10
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1
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2.2k
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Important information (Discover The Ways That We Protect Your Online Access)
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17.4 years ago �2008 HALIFAX SECURITY ▴ 20
0
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4
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2.0k
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About beadarray normaliseIllumina() warning messages
Normalization GO safe beadarray lumi Normalization GO safe beadarray lumi
updated 17.9 years ago by ▴ 410 • written 17.9 years ago by ▴ 150
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1
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1.6k
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[R] Why SAM has totally diffent results in R2.1.1 and R2.4.0
Microarray Genetics Survival multtest siggenes safe Microarray Genetics Survival multtest
updated 19.0 years ago by ▴ 900 • written 19.0 years ago by 25k
0
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2
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2.0k
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BH vs BY in p.adjust
Coverage limma safe Coverage limma safe
updated 19.3 years ago by ★ 13k • written 19.3 years ago by ▴ 50
0
votes
5
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1.8k
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Missing chromosomal locations in hgu133a package
hgu133a AnnBuilder safe hgu133a AnnBuilder safe
updated 19.3 years ago by ▴ 870 • written 19.3 years ago by ▴ 60
0
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1.4k
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limma 3-way interaction
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19.5 years ago Jacob Michaelson ▴ 320
0
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6
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1.5k
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Limma: background correction. Use or ignore?
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updated 19.6 years ago by ★ 2.4k • written 19.6 years ago by ★ 1.9k
0
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2
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1.6k
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GeneSpring can call R functions?
GO GeneSpring safe GO GeneSpring safe
updated 20.5 years ago by ★ 1.1k • written 20.5 years ago by ▴ 250
0
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2
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1.4k
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trouble with yeastann function in AnnBuilder
Annotation Yeast probe AnnBuilder safe Annotation Yeast probe AnnBuilder safe
updated 20.8 years ago by ▴ 10 • written 20.8 years ago by ▴ 320
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2
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1.7k
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Bioconductor data sets - Unigene IDs
probe safe probe safe
updated 23.1 years ago by ★ 2.3k • written 23.1 years ago by ★ 13k
42 results • Page 1 of 1
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
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Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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