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Missing chromosomal locations in hgu133a package
hgu133a AnnBuilder safe hgu133a AnnBuilder safe
updated 17.8 years ago by ▴ 870 • written 17.8 years ago by ▴ 60
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2
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1.3k
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Bioconductor data sets - Unigene IDs
probe safe probe safe
updated 21.6 years ago by ★ 2.3k • written 21.6 years ago by ★ 13k
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4
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4.4k
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Bioconductor with Affymetrix Mouse Gene 1.0 ST
Annotation cdf PROcess safe Annotation cdf PROcess safe
13.1 years ago M. Emily Merrill ▴ 20
0
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2
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1.1k
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trouble with yeastann function in AnnBuilder
Annotation Yeast probe AnnBuilder safe Annotation Yeast probe AnnBuilder safe
updated 19.2 years ago by ▴ 10 • written 19.2 years ago by ▴ 320
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GeneSpring can call R functions?
GO GeneSpring safe GO GeneSpring safe
updated 19.0 years ago by ★ 1.1k • written 19.0 years ago by ▴ 250
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6
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1.1k
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Limma: background correction. Use or ignore?
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updated 18.1 years ago by ★ 2.4k • written 18.1 years ago by ★ 1.9k
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2
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902
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RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
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updated 15.0 years ago by 16k • written 15.0 years ago by ▴ 20
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7
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2.5k
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Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
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updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 50
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Aha: different error may be a clue: RE: separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome with MEDIPS
Alignment BSgenome safe BSgenome MEDIPS Alignment BSgenome safe BSgenome MEDIPS
updated 10.4 years ago by ▴ 570 • written 10.4 years ago by ▴ 220
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GWASTools suggestions: explicit interface for GenotypeReaders,
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updated 10.4 years ago by ▴ 870 • written 10.4 years ago by ▴ 70
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6
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1.7k
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separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome with MEDIPS
Alignment BSgenome safe BSgenome MEDIPS Alignment BSgenome safe BSgenome MEDIPS
updated 10.4 years ago by ▴ 570 • written 10.4 years ago by ▴ 220
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[R] Why SAM has totally diffent results in R2.1.1 and R2.4.0
Microarray Genetics Survival multtest siggenes safe Microarray Genetics Survival multtest
updated 17.4 years ago by ▴ 900 • written 17.4 years ago by 25k
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votes
3
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1.1k
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Package xps - Problem accessing README file
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updated 13.4 years ago by ★ 3.9k • written 13.4 years ago by ★ 8.2k
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1
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Combining data from different versions of Illumina HumanHT-12 v3
Normalization probe safe ArrayExpress Normalization probe safe ArrayExpress
updated 13.0 years ago by ★ 3.6k • written 13.0 years ago by ▴ 220
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votes
2
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1.6k
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BH vs BY in p.adjust
Coverage limma safe Coverage limma safe
updated 17.8 years ago by ★ 13k • written 17.8 years ago by ▴ 50
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votes
4
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1.5k
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About beadarray normaliseIllumina() warning messages
Normalization GO safe beadarray lumi Normalization GO safe beadarray lumi
updated 16.3 years ago by ▴ 410 • written 16.3 years ago by ▴ 150
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5
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1.5k
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Combining data from different versions of Illumina HumanHT-12 v3
Normalization probe limma safe ArrayExpress Normalization probe limma safe ArrayExpress
updated 13.0 years ago by ★ 3.6k • written 13.0 years ago by ▴ 220
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votes
1
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1.3k
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Can't reproduce assessment data included in affycomp package
Cancer affy affycomp PROcess safe Cancer affy affycomp PROcess safe
updated 12.8 years ago by ▴ 590 • written 12.8 years ago by ★ 2.3k
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1
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2.0k
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Important information (Discover The Ways That We Protect Your Online Access)
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15.9 years ago �2008 HALIFAX SECURITY ▴ 20
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votes
3
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1.5k
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Strand information for dbSNP packages
SNPlocs safe SNPlocs safe
updated 12.2 years ago by ★ 6.8k • written 12.2 years ago by ▴ 650
0
votes
5
replies
1.4k
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frma for Nimblegen arrays?
Microarray Normalization affy PROcess safe frma Microarray Normalization affy PROcess
updated 11.5 years ago by ▴ 830 • written 11.5 years ago by ▴ 260
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votes
1
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1.4k
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SCAN UPC probability - validation of gene expression results using UPC
hgu133a2 safe SCAN.UPC hgu133a2 safe SCAN.UPC
updated 11.5 years ago by ▴ 590 • written 11.5 years ago by ▴ 850
0
votes
2
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1.5k
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frma for Nimblegen arrays?
Microarray Annotation Normalization affy PROcess safe frma frmaTools Microarray affy
updated 11.5 years ago by ★ 4.3k • written 11.5 years ago by ▴ 260
0
votes
4
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1.4k
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DEXSeq on two-exon genes: how to specify a formula without redundant terms
safe DEXSeq safe DEXSeq
11.0 years ago • updated 10.9 years ago Narayanan, Manikandan NIH/NIAID [E] ▴ 60
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votes
1
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1.0k
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limma 3-way interaction
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18.0 years ago Jacob Michaelson ▴ 320
0
votes
0
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1.1k
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CRISPRseek: searchHits() optimization
Preprocessing BSgenome safe BSgenome CRISPRseek Preprocessing BSgenome safe BSgenome
9.7 years ago Julie Zhu ★ 4.3k
0
votes
0
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1.3k
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Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
safe BiocInstaller safe BiocInstaller
12.4 years ago Firas Swidan ▴ 50
0
votes
0
replies
648
views
!SPAM: Sale Offer:- ViagraCializ Pills at LowestPrices on net! $1.31/tab, find out more ewlelk 6qu
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15.4 years ago Anisa Gracie ▴ 10
0
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0
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771
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RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
Cancer RdbiPgSQL safe Cancer RdbiPgSQL safe
15.0 years ago Ben Madin ▴ 20
0
votes
0
replies
774
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biomaRt - current devel version of biomaRt+RCurl don't work
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14.9 years ago Patrick Aboyoun ★ 1.6k
0
votes
0
replies
654
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You Don't Have to Quit Smoking. New Technology!
Cancer safe Cancer safe
14.6 years ago inLife E-Cigarettes ▴ 10
0
votes
0
replies
666
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Now you can smoke anywhere you want!
Cancer safe Cancer safe
14.6 years ago inLife E-Cigarettes ▴ 10
0
votes
0
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1.1k
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flowCore 1.22.0 broken for some FCS files
Cancer safe flowCore Cancer safe flowCore
11.9 years ago Josef Spidlen ▴ 140
0
votes
0
replies
879
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Can't reproduce assessment data included in affycomp package
Cancer affycomp PROcess safe Cancer affycomp PROcess safe
13.0 years ago Philippe Serhal ▴ 10
0
votes
0
replies
1.0k
views
Can't reproduce assessment data included in affycomp package
Cancer affy affycomp PROcess safe Cancer affy affycomp PROcess safe
13.0 years ago Harris A. Jaffee ▴ 590
0
votes
0
replies
923
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Fwd: Re: Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
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12.4 years ago Andrea Grilli ▴ 240
0
votes
0
replies
1.2k
views
dbSNP strand information
SNPlocs safe SNPlocs safe
12.2 years ago Alex Gutteridge ▴ 650
0
votes
0
replies
889
views
SCAN UPC probability - validation of gene expression results using UPC
hgu133a2 safe hgu133a2 safe
11.5 years ago Guest User ★ 13k
0
votes
0
replies
1.0k
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BitSeq: Required input for 3' bias correction on transcripts.
RNASeq safe BitSeq RNASeq safe BitSeq
11.2 years ago Dave Gerrard ▴ 40
0
votes
0
replies
915
views
Log transformation and left censoring
limma safe edgeR limma safe edgeR
11.2 years ago Paul Harrison ▴ 100
0
votes
0
replies
1.1k
views
BitSeq: Required input for 3' bias correction on transcripts.
Transcription RNASeq safe BitSeq Transcription RNASeq safe BitSeq
11.2 years ago Peter Glaus ▴ 70
0
votes
0
replies
918
views
SAM for protemics - low q values
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10.6 years ago Hendrik Nolte ▴ 10
42 results • Page 1 of 1
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Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
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