Bioconductor Salmon

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3.1k

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tximport dtu salmon TPM rnaseqDTU

written 5.1 years ago by fiona.dick91 ▴ 60

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1.7k

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salmon edgeR tximport nf-core gene_counts

updated 28 days ago by i.atanasoai • 0 • written 15 months ago by mohammedtoufiq91 ▴ 10

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1.4k

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DESeq2 tximport counts Salmon

updated 12 weeks ago by Michael Love 42k • written 16 months ago by kiqbal • 0

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447

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salmon tximport deseq2

updated 7 months ago by Michael Love 42k • written 7 months ago by Kayleigh • 0

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710

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rna-seq salmon fishpond swish

updated 11 months ago by Michael Love 42k • written 11 months ago by samuelcjx • 0

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320

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swish salmon fishpond

updated 3 months ago by Michael Love 42k • written 3 months ago by Nicholas • 0

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1.6k

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salmon IsoformSwitchAnalyzeR tximport RNASeqData

updated 9 months ago by k.vitting.seerup ▴ 120 • written 9 months ago by elva.gypsophila ▴ 10

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2.9k

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salmon DESeq2

updated 5 months ago by bella.johnson.2022 • 0 • written 2.4 years ago by Sneha • 0

8 results • Page 1 of 1

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Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

Comment: maSigPro genes from clusters by anne-laure • 0

Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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