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sce
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3
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3
replies
1.4k
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Different number of marker genes between same clusters
sce
markers
single cell
DE
clusters
4.6 years ago
ludmi.b
• 0
1
vote
2
replies
882
views
Inserting "Biotype" into scater SCE objects
scater
sce
biotype
R
updated 6.2 years ago by
Aaron Lun
★ 28k • written 6.2 years ago by
thebadpenny
• 0
4
votes
7
replies
4.5k
views
removing rows from SingleCellExperiment container
sce
singlecellexperiment
scRNAseq
subsetting
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
TJ
• 0
2
votes
4
replies
2.3k
views
Quality control in SingleCellExperiment
SingleCellExperiment
scater
sce
quality control
updated 3.3 years ago by
1498554536
• 0 • written 4.1 years ago by
Linda
• 0
0
votes
1
reply
1.2k
views
Clearer error messages in SingleCellExperiment cbind
singlecellexperiment
sce
scater
updated 4.0 years ago by
Aaron Lun
★ 28k • written 4.0 years ago by
bharris
• 0
1
vote
2
replies
1.9k
views
ident function in sce
SingleCellExperiment
cluster
identities
sce
updated 4.0 years ago by
Aaron Lun
★ 28k • written 4.0 years ago by
reinepapillon
• 0
0
votes
2
replies
1.0k
views
How to process ids containing "." in BiomaRt?
sce
biomart
annotation
updated 6.8 years ago by
Mike Smith
★ 6.5k • written 6.8 years ago by
linda.c.dansereau
• 0
2
votes
5
replies
4.2k
views
Merging multiple single cell experiment objects from different samples
sce
SingleCellExperiment
merge
updated 14 months ago by
mollyab12
• 0 • written 2.0 years ago by
achoppe
▴ 10
8 results • Page
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Comment: EGSEA usage with microarray data (with vooma)?
by
Chris
• 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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