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sce
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2
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5
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4.2k
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Merging multiple single cell experiment objects from different samples
sce
SingleCellExperiment
merge
updated 14 months ago by
mollyab12
• 0 • written 2.1 years ago by
achoppe
▴ 10
1
vote
2
replies
1.9k
views
ident function in sce
SingleCellExperiment
cluster
identities
sce
updated 4.0 years ago by
Aaron Lun
★ 28k • written 4.0 years ago by
reinepapillon
• 0
0
votes
1
reply
1.2k
views
Clearer error messages in SingleCellExperiment cbind
singlecellexperiment
sce
scater
updated 4.0 years ago by
Aaron Lun
★ 28k • written 4.0 years ago by
bharris
• 0
2
votes
4
replies
2.4k
views
Quality control in SingleCellExperiment
SingleCellExperiment
scater
sce
quality control
updated 3.3 years ago by
1498554536
• 0 • written 4.2 years ago by
Linda
• 0
3
votes
3
replies
1.4k
views
Different number of marker genes between same clusters
sce
markers
single cell
DE
clusters
4.6 years ago
ludmi.b
• 0
4
votes
7
replies
4.5k
views
removing rows from SingleCellExperiment container
sce
singlecellexperiment
scRNAseq
subsetting
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
TJ
• 0
1
vote
2
replies
885
views
Inserting "Biotype" into scater SCE objects
scater
sce
biotype
R
updated 6.2 years ago by
Aaron Lun
★ 28k • written 6.2 years ago by
thebadpenny
• 0
0
votes
2
replies
1.0k
views
How to process ids containing "." in BiomaRt?
sce
biomart
annotation
updated 6.9 years ago by
Mike Smith
★ 6.5k • written 6.9 years ago by
linda.c.dansereau
• 0
8 results • Page
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Comment: Problem finding certain variables when importing a public database GSE73103
by
Guido Hooiveld
★ 3.9k
FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Comment: ChAMP installation issue
by
shepherl
3.9k
Without showing the commands you tried and the full output including error it is impossible to help. Please provide additional information…
Answer: Gene set enrichment analysis
by
Guido Hooiveld
★ 3.9k
No, that is not possible. The idea of gene set enrichment analysis (GSEA) is that it checks which gene sets (pathways, GO categories) are e…
Votes
A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
Why p value inconsistent when using different number of pathway score?
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
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