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scuttle

updated 15 days ago by Aaron Lun ★ 28k • written 17 days ago by Adam ▴ 10

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scran bluster scater scuttle

updated 9 months ago by ATpoint ★ 4.6k • written 9 months ago by Dario Strbenac ★ 1.5k

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scuttle scater

updated 15 months ago by ATpoint ★ 4.6k • written 15 months ago by Abbi Edwards • 0

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scuttle scater seurat SpatialExperiment

22 months ago cathalgking ▴ 10

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scuttle scater SpatialExperiment

updated 23 months ago by alan.ocallaghan ▴ 160 • written 23 months ago by cathalgking ▴ 10

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normalizeCounts scran librarySizeFactors scuttle scRNAseq

2.8 years ago behr201 • 0

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scater SingleCellExperiment BiocParallel scuttle scran

3.2 years ago • updated 3.1 years ago enricoferrero ▴ 660

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scran SingleCellExperiment scuttle scater

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by enricoferrero ▴ 660

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scran scater scuttle

updated 4.4 years ago by Aaron Lun ★ 28k • written 4.4 years ago by enricoferrero ▴ 660

9 results • Page 1 of 1

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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Hervé Pagès 16k

> I have requested gDNAx developers for a feature request to turn off seqlevelsStyle(txdb) Yes, that's the right course of action. `seqlev…

Comment: ISO a solution to rank-order introns by transcript by mat149 ▴ 80

Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Since the intra-block correlation is negative, it would be best to remove `block` from the model. My experience with genetically identical…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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