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scuttle
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reset
2
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5
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1.0k
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scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
scuttle
updated 11 months ago by
Aaron Lun
★ 29k • written 11 months ago by
Adam
▴ 10
2
votes
1
reply
973
views
Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Comparison
scran
bluster
scater
scuttle
updated 19 months ago by
ATpoint
★ 5.0k • written 19 months ago by
Dario Strbenac
★ 1.6k
0
votes
3
replies
2.1k
views
Is logNormCounts log2 normalised counts as default?
scuttle
scater
updated 2.2 years ago by
ATpoint
★ 5.0k • written 2.2 years ago by
Abbi Edwards
• 0
1
vote
0
replies
2.8k
views
Convert SpatialExperiment Object to Seurat Object
scuttle
scater
seurat
SpatialExperiment
2.8 years ago
cathalgking
▴ 10
0
votes
1
reply
1.3k
views
cell_count column in SpatialExperiment Object
scuttle
scater
SpatialExperiment
updated 2.8 years ago by
alan.ocallaghan
▴ 160 • written 2.8 years ago by
cathalgking
▴ 10
2
votes
2
replies
2.1k
views
scuttle:: librarySizeFactors returning non-finite values
normalizeCounts
scran
librarySizeFactors
scuttle
scRNAseq
3.7 years ago
behr201
• 0
3
votes
3
replies
2.6k
views
Ensuring reproducibility in BiocParallel SingleCellExperiment workflows
scater
SingleCellExperiment
BiocParallel
scuttle
scran
4.0 years ago
enricoferrero
▴ 680
4
votes
5
replies
3.8k
views
scuttle::aggregateAcrossCells() crashes R on large SingleCellExperiment
scran
SingleCellExperiment
scuttle
scater
updated 4.8 years ago by
Aaron Lun
★ 29k • written 4.8 years ago by
enricoferrero
▴ 680
5
votes
4
replies
8.5k
views
scRNA-seq pseudo-bulk differential expression analysis with pseudobulkDGE()
scran
scater
scuttle
updated 5.2 years ago by
Aaron Lun
★ 29k • written 5.2 years ago by
enricoferrero
▴ 680
9 results • Page
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Answer: Question about collapsing ASVs by genus level during DESeq2 analysis
by
Michael Love
43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Comment: Highly DE genes but small count difference within conditions
by
shy.hippopotamus.yxmb
• 0
Monkey Mart: The Ultimate Gaming Marketplace Experience https://monkeymart.one/
Comment: Highly DE genes but small count difference within conditions
by
shy.hippopotamus.yxmb
• 0
Enter the world of Monkey Mart, where gaming meets innovation. We've created a cutting-edge marketplace that's transforming how gamers trad…
Comment: Highly DE genes but small count difference within conditions
by
shy.hippopotamus.yxmb
• 0
Enter the world of , where gaming meets innovation. We've created a cutting-edge marketplace that's transforming how gamers trade and conne…
Comment: copy number/LOH for Affy 100K
by
igkryycpinmshzugby
• 0
Hi John For copy number and LOH analysis from Affymetrix 100K SNP arrays you can use aroma.affymetrix or CRLMM packages in Bioconductor. …
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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