Bioconductor Scuttle

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scuttle

updated 11 months ago by Aaron Lun ★ 29k • written 11 months ago by Adam ▴ 10

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scran bluster scater scuttle

updated 19 months ago by ATpoint ★ 5.0k • written 19 months ago by Dario Strbenac ★ 1.6k

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scuttle scater

updated 2.2 years ago by ATpoint ★ 5.0k • written 2.2 years ago by Abbi Edwards • 0

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scuttle scater seurat SpatialExperiment

2.8 years ago cathalgking ▴ 10

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scuttle scater SpatialExperiment

updated 2.8 years ago by alan.ocallaghan ▴ 160 • written 2.8 years ago by cathalgking ▴ 10

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normalizeCounts scran librarySizeFactors scuttle scRNAseq

3.7 years ago behr201 • 0

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scater SingleCellExperiment BiocParallel scuttle scran

4.0 years ago enricoferrero ▴ 680

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scran SingleCellExperiment scuttle scater

updated 4.8 years ago by Aaron Lun ★ 29k • written 4.8 years ago by enricoferrero ▴ 680

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scran scater scuttle

updated 5.3 years ago by Aaron Lun ★ 29k • written 5.3 years ago by enricoferrero ▴ 680

9 results • Page 1 of 1

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Answer: Failure to download resources (MeSHDb) from AnnotationHub by shepherl 4.2k

apologies. These are contributed by someone outside the core team. On upload I did not realize they included the older Bioconductor storage…

Comment: Save the Date for EuroBioC2026 in Turku! by jamesbennettki • 0

That sounds amazing I have always wanted to visit Finland and meet others in the Bioconductor community Events like EuroBioC2026 inspire me…

Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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