Showing : snapcgh • reset
0
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8
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2.0k
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segmentation aCGH data
Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy
16.6 years ago jhs1jjm@leeds.ac.uk ▴ 230
0
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7
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1.8k
views
segmentation for Affy SNP arrays
SNP CGH affy GLAD snapCGH SNP CGH affy GLAD snapCGH
updated 16.6 years ago by ▴ 250 • written 16.6 years ago by ▴ 440
0
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2
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1.1k
views
snapCGH package not loaded
snapCGH snapCGH
updated 14.2 years ago by ▴ 20 • written 14.2 years ago by ▴ 500
0
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2
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1.0k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH convert aCGH snapCGH aCGH convert aCGH snapCGH
16.9 years ago Ian Roberts ▴ 70
0
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2
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1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 16.6 years ago by ▴ 40 • written 16.6 years ago by ▴ 110
0
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7
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1.6k
views
processCGH in snapCGH package
CGH snapCGH CGH snapCGH
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
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2
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2.0k
views
FW: Cannot restore saved data in .Rdata after loading tilingArray - object 'breakpoints' not found
Cancer Breast PROcess tilingArray snapCGH Cancer Breast PROcess tilingArray snapCGH
updated 17.7 years ago by ★ 13k • written 17.7 years ago by ▴ 310
2
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2
replies
1.3k
views
snapCGH segmentation fault
snapcgh software error
updated 8.5 years ago by ▴ 70 • written 8.5 years ago by • 0
0
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1
reply
1.2k
views
How to use snapCGH with Nimblegen data
CGH snapCGH CGH snapCGH
updated 17.6 years ago by ▴ 310 • written 17.6 years ago by ▴ 30
0
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1
reply
974
views
SnapCGH problem
Cancer snapCGH Cancer snapCGH
17.2 years ago Daniel Brewer ★ 1.9k
0
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4
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1.0k
views
CGH HomHMM problem and how to debug
Cancer snapCGH Cancer snapCGH
17.2 years ago Daniel Brewer ★ 1.9k
0
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3
replies
1.2k
views
snapCGH: T instead of TRUE, etc
Cancer snapCGH Cancer snapCGH
17.2 years ago Ramon Diaz ★ 1.1k
0
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2
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956
views
snapCGH question
aCGH aCGH snapCGH aCGH aCGH snapCGH
updated 17.1 years ago by 21k • written 17.1 years ago by ▴ 90
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1
reply
1.3k
views
CGH analysis warning messages
Cancer CGH snapCGH Cancer CGH snapCGH
updated 16.8 years ago by ▴ 70 • written 16.9 years ago by ★ 1.9k
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4
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1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
0
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4
replies
1.2k
views
snapCGH_error in plotting segmentation
snapCGH snapCGH
updated 15.6 years ago by 21k • written 15.6 years ago by ▴ 340
0
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1
reply
978
views
normexp error (while using snapCGH)
CGH snapCGH CGH snapCGH
updated 15.6 years ago by ▴ 340 • written 15.6 years ago by ▴ 340
0
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4
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1.5k
views
snapCGH fails in runBioHMM
aCGH Microarray TwoChannel Cancer limma aCGH snapCGH aCGH Microarray TwoChannel Cancer
updated 15.0 years ago by ▴ 160 • written 15.0 years ago by ★ 1.1k
0
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5
replies
1.9k
views
snapCGH, runBioHMM, Error: segfault from C stack overflow
snapCGH snapCGH
updated 14.2 years ago by ▴ 150 • written 14.2 years ago by ▴ 100
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2
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1.5k
views
Nimblegen CGH ringo to snapCGH
CGH snapCGH Ringo CGH snapCGH Ringo
updated 14.0 years ago by ▴ 450 • written 14.1 years ago by ▴ 80
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1
reply
1.6k
views
how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 110
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1
reply
898
views
snapCGH doesn't work: unable to load shared library ...
snapCGH snapCGH
updated 13.2 years ago by 25k • written 13.2 years ago by ▴ 20
0
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1
reply
1.5k
views
Question regarding the use of the snapCGH package to analyze aCGH data obtained from TCGA
Microarray Annotation CGH snapCGH Microarray Annotation CGH snapCGH
updated 9.8 years ago by 21k • written 9.8 years ago by ★ 13k
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0
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847
views
problem with readPositionalInfo() for Nimblegen for ArrayCGH
snapCGH cghMCR snapCGH cghMCR
12.8 years ago Muksitul Haque ▴ 10
0
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0
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1.0k
views
general CGH threshold question
aCGH CGH aCGH GLAD snapCGH aCGH CGH aCGH GLAD snapCGH
14.7 years ago Wolfgang RAFFELSBERGER ▴ 140
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0
replies
1.0k
views
problems with snapCGH readPositionalInfo processCGH
CGH snapCGH CGH snapCGH
14.7 years ago Dick Beyer ★ 1.4k
0
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0
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948
views
snapCGH and processCGH
snapCGH snapCGH
14.6 years ago lakshmi dhevi ▴ 10
0
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0
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784
views
snapCGH - could not find function "readPositionalInfo"
GUI snapCGH GUI snapCGH
14.5 years ago Kristian Almstrup ▴ 10
0
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0
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1.1k
views
DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
14.3 years ago Daniel Rico ▴ 110
0
votes
0
replies
749
views
aCGH package analysis - duplicate spot averaging problem
aCGH aCGH snapCGH aCGH aCGH snapCGH
16.8 years ago Ian Roberts ▴ 70
0
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0
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848
views
snapCGH and clonesinfo
CGH limma snapCGH CGH limma snapCGH
10.9 years ago Juliet Hannah ▴ 360
0
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0
replies
680
views
snapCGH package for expression data?
aCGH Organism aCGH snapCGH aCGH Organism aCGH snapCGH
16.7 years ago Lyudmila Mikhaylova ▴ 20
0
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0
replies
1.2k
views
readPositionalInfo in snapCGH for preparing CNA files for DNAcopy
aCGH DNAcopy aCGH snapCGH aCGH DNAcopy aCGH snapCGH
10.8 years ago Guest User ★ 13k
0
votes
0
replies
828
views
Converting Seglist to segments file
Cancer convert DNAcopy snapCGH cghMCR Cancer convert DNAcopy snapCGH cghMCR
16.8 years ago Daniel Brewer ★ 1.9k
0
votes
0
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850
views
problem with analyzing human 244k agilent array with snapCGH
Annotation Cancer snapCGH Annotation Cancer snapCGH
16.1 years ago Sean Davis 21k
0
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0
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834
views
snapCGH and Nimblegen arrays
Cancer snapCGH Cancer snapCGH
16.0 years ago Gareth Wilson ▴ 10
0
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0
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1.1k
views
analysing NimbleGen CGH for CNV
aCGH probe aCGH snapCGH Ringo aCGH probe aCGH snapCGH Ringo
13.4 years ago Adeolu Adewoye ▴ 40
0
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0
replies
921
views
Get data frame of CNV calls from Seglist object
seglist snapcgh dnacopy
8.7 years ago Cian Murphy ▴ 40
0
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0
replies
700
views
snapCGH plotting
GO graph snapCGH GO graph snapCGH
14.7 years ago Boris Umylny ▴ 120
0
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0
replies
756
views
error in runBioHMM() (package snapCGH)
CGH snapCGH CGH snapCGH
15.0 years ago Wolfgang Raffelsberger ▴ 160
40 results • Page 1 of 1
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Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0
Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Comment: fgsea significant result by Chris • 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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