Showing : snp • reset
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find gene symbols immediately flanking before and after a SNP position
SNP SNP
updated 13.1 years ago by ★ 6.8k • written 13.1 years ago by ▴ 220
1
vote
3
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1.8k
views
VariantAnnotation package with snp location
SNP VariantAnnotation VariantAnnotation SNP VariantAnnotation VariantAnnotation
updated 13.1 years ago by ★ 4.2k • written 13.1 years ago by ▴ 970
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3
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1.4k
views
VariantAnnotation: fine define Locating variants in and around genes
SNP VariantAnnotation VariantAnnotation SNP VariantAnnotation VariantAnnotation
updated 13.1 years ago by ★ 6.8k • written 13.1 years ago by ▴ 970
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1.1k
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biomaRt error
SNP biomaRt SNP biomaRt
13.1 years ago Christopher T Gregg ▴ 210
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3
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2.4k
views
Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package Bioconductor x
SNP SNPlocs SNP SNPlocs
updated 13.1 years ago by 16k • written 13.1 years ago by ▴ 40
0
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0
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1.2k
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Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package
SNP SNPlocs SNP SNPlocs
13.1 years ago Christina Chaivorapol ▴ 40
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1.2k
views
Using different file formats with oligo and analysis packages using oligo
SNP Microarray qPCR cycle SNP Microarray qPCR cycle
13.2 years ago Hans Thompson ▴ 30
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3
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8.4k
views
Retrieving SNP rs IDs using biomaRt getBM()
SNP SNP
updated 13.3 years ago by 16k • written 13.3 years ago by ★ 13k
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1.5k
views
Using aCGH library on Affymetrix Cytogenetics 2.7M microarray data
aCGH SNP PROcess aCGH aCGH SNP PROcess aCGH
13.3 years ago Guest User ★ 13k
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1.3k
views
SNP6.0 annotation
SNP Annotation probe annotate SIM SNP Annotation probe annotate SIM
13.3 years ago Guest User ★ 13k
0
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4
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4.2k
views
rs ids Retrieval using biomaRt
SNP biomaRt SNP biomaRt
updated 13.3 years ago by 6.7k • written 13.3 years ago by ▴ 760
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1
reply
1.3k
views
Convert Affy SNP array 0, 1, 2 to A C G T
SNP affy convert SNP affy convert
13.4 years ago Fabrice Tourre ▴ 970
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0
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1.4k
views
NAs in snp.rhs.tests
SNP illuminaHumanv1 affy crlmm SNP illuminaHumanv1 affy crlmm
13.4 years ago maria traka IFR ▴ 30
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1
reply
1.9k
views
Illumina SNP array annotation
SNP SNP
updated 13.4 years ago by 68k • written 13.4 years ago by ▴ 970
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4
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2.2k
views
GGtools: transScores function returning cis eQTL
SNP Annotation probe SNPlocs GGtools SNP Annotation probe SNPlocs GGtools
updated 13.4 years ago by 6.7k • written 13.4 years ago by ★ 13k
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0
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3.7k
views
Bioconductor 2.11 is released
BiocViews SNP Transcription Sequencing miRNA Microbiome Microarray qPCR Genetics Coverage
13.4 years ago Dan Tenenbaum ★ 8.2k
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2
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1.6k
views
Printing Alt alleles using VariantAnnotation
SNP Annotation SNP Annotation
updated 13.4 years ago by 68k • written 13.4 years ago by ★ 1.1k
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0
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964
views
SNP call estimation from Fluidigm Microarrays
SNP Normalization SNP Normalization
13.5 years ago Hans Thompson ▴ 30
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0
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1.8k
views
the set of SNPs difference between Genome build 37.1 and 37.3
SNP HapMap SNP HapMap
13.5 years ago shirley zhang ★ 1.0k
2
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1
reply
2.6k
views
overlap GRangesList and vcf
SNP SNP
updated 13.6 years ago by ★ 6.8k • written 13.6 years ago by ▴ 120
0
votes
6
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7.1k
views
Calculate heterozygosity % using SNP genotype data
SNP snpMatrix SNP snpMatrix
updated 13.6 years ago by 6.7k • written 13.6 years ago by ▴ 210
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1
reply
1.1k
views
rtracklayer import.gff3 mangling scores
SNP rtracklayer SNP rtracklayer
updated 13.6 years ago by ★ 11k • written 13.6 years ago by ▴ 270
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3
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5.3k
views
Translating AB/BB/AA into a SNP with Illumina data
SNP crlmm SNP crlmm
updated 13.6 years ago by ▴ 890 • written 13.6 years ago by ▴ 480
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3
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1.8k
views
help with genotyping
SNP SNP
updated 13.6 years ago by ★ 4.3k • written 13.6 years ago by ▴ 20
0
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0
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1.0k
views
minor allele frequency comparison from two softwares based on the same sequencing data
SNP Sequencing SNP Sequencing
13.7 years ago Jiafen ▴ 10
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1
reply
1.6k
views
boxplot/histograms on preprocessed SNP affy data with crlmm package
SNP oligo crlmm SNP oligo crlmm
updated 13.7 years ago by ★ 4.3k • written 13.7 years ago by ▴ 840
0
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1
reply
2.9k
views
Calculate heterozygosity % using SNP genotype data
SNP SNP
updated 13.7 years ago by ★ 6.8k • written 13.8 years ago by ▴ 130
0
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0
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1.3k
views
statistics from snpStats objects
SNP snpStats SNP snpStats
13.7 years ago james power ▴ 10
0
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1
reply
1.1k
views
BiomaRt Query error Edited
SNP biomaRt SNP biomaRt
updated 13.7 years ago by ★ 7.2k • written 13.8 years ago by ▴ 760
0
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0
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938
views
BiomaRt query error
SNP biomaRt SNP biomaRt
13.8 years ago Voke AO ▴ 760
0
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1
reply
1.3k
views
oligo: error in crlmm function
SNP oligo SNP oligo
updated 13.8 years ago by ★ 4.3k • written 13.8 years ago by ▴ 840
0
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3
replies
3.9k
views
GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 13.8 years ago by 6.7k • written 13.8 years ago by ▴ 20
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3
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1.7k
views
Package for doing Copy number analsysi with LOH
SNP SNP
updated 13.8 years ago by ★ 2.4k • written 13.8 years ago by ▴ 10
0
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1
reply
1.2k
views
Finding coding SNPs with predictCoding
SNP Annotation BSgenome BSgenome GenomicFeatures cycle genomes SNP Annotation BSgenome
updated 13.8 years ago by ★ 1.7k • written 13.8 years ago by ★ 6.8k
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1
reply
2.0k
views
Copy Number Analysis across multiple SNP array plaforms
SNP Cancer crlmm ffpe SNP Cancer crlmm ffpe
updated 13.8 years ago by ▴ 210 • written 13.8 years ago by ▴ 20
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1
reply
1.8k
views
FW: Overlay Gene Expression on SNP (copy number) data
SNP Coverage Network Cancer TranscriptDb IRanges RCytoscape ggbio Gviz SNP Coverage
updated 13.9 years ago by ★ 4.2k • written 13.9 years ago by ▴ 370
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0
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1.3k
views
Normalized values in oligo::crlmm and oligo::snprma don't match?
SNP Normalization oligo crlmm SNP Normalization oligo crlmm
13.9 years ago Denise Mak ▴ 10
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3
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1.5k
views
Overlay Gene Expression on SNP (copy number) data
SNP SNP
updated 13.9 years ago by ▴ 420 • written 13.9 years ago by ▴ 370
0
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2
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1.6k
views
Finding coding SNPs with predictCoding
SNP Annotation BSgenome ctc BSgenome cycle genomes SNP Annotation BSgenome ctc BSgenome
updated 13.9 years ago by ★ 1.7k • written 13.9 years ago by ★ 6.8k
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1
reply
1.9k
views
DNAcopy for CNV in SNP Affy 6.0
SNP affy DNAcopy SNP affy DNAcopy
13.9 years ago Ekta Jain ▴ 370
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4
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3.1k
views
Copy number analysis
SNP affy SNP affy
updated 14.0 years ago by ▴ 210 • written 14.0 years ago by ★ 13k
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0
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1.4k
views
Copy number analysis
SNP affy VanillaICE SNP affy VanillaICE
14.0 years ago Rob Scharpf ▴ 250
0
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2
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1.1k
views
New to Bioconductor is there a better way?
SNP GO SNP GO
updated 14.0 years ago by ★ 6.5k • written 14.0 years ago by ▴ 40
0
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11
replies
2.5k
views
error in locateVariants for a GRanges object
SNP SNP
updated 14.0 years ago by 25k • written 14.0 years ago by ▴ 380
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4
replies
2.2k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 14.0 years ago by ▴ 20 • written 14.0 years ago by ▴ 30
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1
reply
981
views
classify SNPs
SNP SNP
updated 14.0 years ago by ★ 4.2k • written 14.0 years ago by ▴ 40
0
votes
5
replies
1.9k
views
Finding coding SNPs with predictCoding
SNP ctc SNP ctc
updated 14.0 years ago by ★ 1.7k • written 14.0 years ago by ★ 6.8k
0
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4
replies
2.0k
views
Finding coding SNPs with predictCoding
SNP VariantAnnotation BSgenome SNPlocs BSgenome VariantAnnotation SNP VariantAnnotation
updated 14.0 years ago by ★ 6.8k • written 14.0 years ago by ▴ 650
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12
replies
13k
views
Add extra columns to GRanges Metadata
SNP SNP
updated 14.0 years ago by ★ 4.2k • written 14.0 years ago by ▴ 970
0
votes
2
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7.4k
views
gplots Heatmap
SNP Transcription Sequencing RNASeq miRNA Microarray Annotation Normalization GO Cancer
updated 14.1 years ago by ★ 13k • written 14.1 years ago by ▴ 10
343 results • Page 3 of 7
Recent ...
Replies
Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k
> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…
Answer: GSEA error by James W. MacDonald 68k
At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…
Comment: Unable to find ENTREZ IDs by Adithi • 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Comment: Unable to find ENTREZ IDs by Adithi • 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Answer: Unable to find ENTREZ IDs by James W. MacDonald 68k
Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…
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Answer: GSEA error
Answer: OrgDb for maize
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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