Showing : snp • reset
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Any R Package To Detect Copy Neutral LOH for SNP 6.0 Array Data
microarray affy snp
11.0 years ago sun ▴ 100
5
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5
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4.8k
views
SNP Function Information from biomaRt
biomart snp nonsynonymous
updated 11.0 years ago by 21k • written 11.0 years ago by ▴ 10
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ChIPpeakAnno
SNP Annotation annotate convert SNP Annotation annotate convert
11.2 years ago Julie Zhu ★ 4.3k
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6
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3.1k
views
crlmm : copy number and genotyping of Illumina data
SNP Annotation Normalization crlmm copynumber SNP Annotation Normalization crlmm
updated 11.4 years ago by ▴ 1000 • written 11.4 years ago by ▴ 160
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1
reply
2.8k
views
help with analysis of genotyping data from Illumina HumanOmni5-4v1_B chip
SNP VariantAnnotation Annotation probe VariantAnnotation GWASTools SNP VariantAnnotation
updated 11.4 years ago by ▴ 890 • written 11.4 years ago by ▴ 160
0
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1
reply
1.6k
views
SNP ID mapping with oligo package (pd.genomewidesnp.6)
SNP SNP
updated 11.4 years ago by 6.7k • written 11.4 years ago by ▴ 10
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1.2k
views
SNP ID mapping with Oligo package
SNP SNP
11.4 years ago Guest User ★ 13k
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0
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1.8k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
11.4 years ago swarmqq@gmail.com ▴ 10
0
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1
reply
2.0k
views
snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 11.4 years ago by 6.7k • written 11.4 years ago by ★ 13k
0
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4
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2.5k
views
Help with sliding window analysis on GRanges object
SNP IRanges SNP IRanges
updated 11.5 years ago by ★ 11k • written 11.5 years ago by ▴ 140
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4
replies
1.7k
views
GWASdata
SNP affy SNP affy
11.5 years ago Naomi Altman ★ 6.0k
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0
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4.5k
views
Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
11.5 years ago Dan Tenenbaum ★ 8.2k
0
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5
replies
1.9k
views
affy( ) error with mas5()
SNP affy PROcess SNP affy PROcess
updated 11.6 years ago by 68k • written 11.6 years ago by ▴ 110
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0
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1.3k
views
rehh package for iHS and Rsb
SNP SNP
11.6 years ago Abugri James ▴ 20
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0
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1.6k
views
crlmm problem
SNP convert beadarray crlmm SNP convert beadarray crlmm
11.6 years ago Matthias Arnold ▴ 10
0
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3
replies
2.1k
views
CRLMM Annotation file
SNP Annotation cdf SNP Annotation cdf
updated 11.7 years ago by 68k • written 11.7 years ago by ▴ 40
0
votes
1
reply
2.5k
views
crlmm : copy number and genotyping of Illumina data
SNP Annotation Normalization crlmm copynumber SNP Annotation Normalization crlmm
updated 11.7 years ago by ▴ 1000 • written 11.7 years ago by ▴ 160
0
votes
3
replies
2.4k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
updated 11.7 years ago by ▴ 20 • written 11.7 years ago by ★ 4.2k
0
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2
replies
1.9k
views
crlmm problem
SNP beadarray crlmm SNP beadarray crlmm
11.7 years ago Aaerp ▴ 40
0
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0
replies
1.6k
views
minfi release 1.8
SNP Annotation minfi bumphunter SNP Annotation minfi bumphunter
11.7 years ago C T ▴ 20
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votes
3
replies
2.1k
views
Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 11.8 years ago by 6.7k • written 11.8 years ago by ▴ 50
0
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2
replies
2.3k
views
help with analysis of genotyping data from Illumina HumanOmni5-4v1_B chip
SNP Annotation SNP Annotation
updated 11.8 years ago by ▴ 890 • written 11.8 years ago by ▴ 190
0
votes
1
reply
2.5k
views
Reading IDAT files with illuminaio
SNP illuminaio SNP illuminaio
updated 11.9 years ago by ★ 6.5k • written 11.9 years ago by ★ 6.6k
0
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2
replies
2.5k
views
minfi release 1.8
SNP Annotation minfi bumphunter SNP Annotation minfi bumphunter
updated 11.9 years ago by ★ 6.5k • written 11.9 years ago by ▴ 30
2
votes
2
replies
2.5k
views
Converting single GRanges object as per chromosome GRangeList
SNP GO convert SNP GO convert
updated 11.9 years ago by ★ 13k • written 11.9 years ago by ▴ 260
0
votes
1
reply
1.7k
views
minfi release 1.8
SNP Annotation minfi bumphunter SNP Annotation minfi bumphunter
updated 12.0 years ago by ▴ 30 • written 12.0 years ago by ★ 6.5k
0
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2
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7.2k
views
how to obtain base counts from BAM file at specific genomic coordinates
SNP Sequencing Coverage Alignment Cancer Biostrings PROcess IRanges GenomicRanges SNP
updated 12.0 years ago by ★ 11k • written 12.0 years ago by 16k
0
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0
replies
4.6k
views
Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
12.0 years ago Dan Tenenbaum ★ 8.2k
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0
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1.3k
views
Problem in reading SNP hapmap data
SNP HapMap SNP HapMap
12.1 years ago Xiaolian Yuan ▴ 30
0
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3
replies
952
views
Hello
SNP SNP
updated 12.1 years ago by 25k • written 12.1 years ago by ▴ 20
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1
reply
1.1k
views
longitudinal GWAS analysis
SNP SNP
updated 12.1 years ago by ★ 13k • written 12.1 years ago by ▴ 40
0
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1
reply
1.7k
views
Way to extract population specific genotype from 1000 genome
SNP Cancer SNP Cancer
updated 12.3 years ago by 6.7k • written 12.3 years ago by ▴ 260
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1
reply
1.7k
views
GWATools use in creating ncdf files
SNP Annotation cdf GWASTools SNP Annotation cdf GWASTools
updated 12.3 years ago by ▴ 890 • written 12.3 years ago by ▴ 60
0
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1
reply
850
views
ReadGappedAlignments and FindOverlaps
SNP SNP
updated 12.3 years ago by ★ 11k • written 12.3 years ago by ★ 13k
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0
replies
1.2k
views
getting genotypes with oligo package
SNP oligo crlmm SNP oligo crlmm
12.3 years ago Guest User ★ 13k
0
votes
1
reply
907
views
pulling out specific lines from a bam file
SNP SNP
updated 12.3 years ago by 25k • written 12.3 years ago by ★ 13k
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0
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1.1k
views
Help with ensembl variation biomaRt query
SNP biomaRt SNP biomaRt
12.4 years ago William Noderer ▴ 10
0
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3
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3.9k
views
SNP annotation in R
SNP SNP
12.4 years ago Ina Hoeschele ▴ 620
0
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5
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2.3k
views
GWATools use in creating ncdf files
SNP Annotation cdf GWASTools SNP Annotation cdf GWASTools
updated 12.4 years ago by ▴ 60 • written 12.4 years ago by ▴ 890
0
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2
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4.4k
views
From location to get the SNP rs ID
SNP Cancer SNPlocs ASSIGN SNP Cancer SNPlocs ASSIGN
updated 12.4 years ago by 16k • written 12.4 years ago by ▴ 970
0
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3
replies
1.9k
views
GWATools use in creating ncdf files
SNP cdf GWASTools SNP cdf GWASTools
updated 12.4 years ago by ▴ 60 • written 12.4 years ago by ▴ 890
0
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1
reply
1.0k
views
R crash on getBM query
SNP Annotation biomaRt SNP Annotation biomaRt
updated 12.4 years ago by 21k • written 12.4 years ago by ▴ 10
0
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5
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4.3k
views
how to convert genotype snp matrix to nucleotide genotypes?
SNP convert snpMatrix SNP convert snpMatrix
updated 12.5 years ago by 6.7k • written 12.5 years ago by ▴ 20
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1
reply
1.1k
views
transform gwaa.data (Genabel) to snp.matrix (chopsticks)
SNP SNP
updated 12.5 years ago by ★ 1.3k • written 12.5 years ago by ▴ 170
0
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6
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2.1k
views
need help for the study design of a RNA-Seq project
SNP Sequencing SNP Sequencing
12.5 years ago shirley zhang ★ 1.0k
0
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1
reply
1.3k
views
Annotated a snp list to find where these snp are located.
SNP annotate SNP annotate
updated 12.5 years ago by ★ 6.8k • written 12.5 years ago by ▴ 970
0
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1
reply
1.7k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 12.6 years ago by 6.7k • written 12.6 years ago by ▴ 10
0
votes
1
reply
1.8k
views
Crlmm package
SNP Annotation Normalization crlmm SNP Annotation Normalization crlmm
updated 12.7 years ago by ▴ 1000 • written 12.7 years ago by ▴ 400
0
votes
5
replies
2.2k
views
Visualization of alignments with mismatch bases
SNP Coverage Alignment Visualization ggbio SNP Coverage Alignment Visualization ggbio
updated 12.7 years ago by ▴ 420 • written 12.7 years ago by ★ 11k
0
votes
1
reply
2.5k
views
SNPassoc package data upload
SNP SNP
updated 12.7 years ago by ★ 6.8k • written 12.7 years ago by ▴ 50
343 results • Page 2 of 7
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Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
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A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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