1
vote
9
replies
3.0k
views
4
votes
12
replies
3.7k
views
updated 7 months ago by
Miguel
•
0
•
written 3.2 years ago by
robert.chen
•
0
0
votes
2
replies
1.1k
views
2.8 years ago • updated 2.7 years ago
maria.soler
•
0
3
votes
4
replies
1.6k
views
1
vote
2
replies
590
views
4
votes
2
replies
1.7k
views
Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
updated 15 months ago by
ATpoint
★
4.1k
•
written 15 months ago by
kalavattam
▴
10
0
votes
1
reply
1.3k
views
updated 15 months ago by
Michael Love
41k
•
written 15 months ago by
kalavattam
▴
10
0
votes
0
replies
703
views
2.7 years ago
mb1996
•
0
0
votes
0
replies
94
views
0
votes
0
replies
906
views
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
•
0
Hi Michael,
I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★
1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024).
In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part:
```
design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa)
colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Awards
• All
Popular Question to
Gordon Smyth
50k
Popular Question to
Zainab
•
0
Popular Question to
Theo
▴
10
Popular Question to
gene_bioconductor
▴
10
Popular Question to
rohitsatyam102
▴
20
Locations
• All
France, 10 minutes ago
India, 49 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
United States, 1 hour ago
France, 1 hour ago
France, 10 minutes ago
India, 49 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
United States, 1 hour ago
France, 1 hour ago
Traffic: 573 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6