Showing : sra • reset
0
votes
1
reply
1.7k
views
Creating a DESeqDataSet from a RangedSummarizedExperiment - where is the design parameter in RangedSummarizedExperiment
SRA DESeq2
4.6 years ago Serge • 0
0
votes
0
replies
1.4k
views
Problem for Splitting reverse and forward reading in my RNA-seq
RNA-seq SRA reverse reads forward reads
7.6 years ago modarzi ▴ 10
2
votes
1
reply
1.9k
views
Uniting SRA Data into a single file
R fastq SRA sradb
updated 9.2 years ago by 25k • written 9.2 years ago by • 0
0
votes
3
replies
4.8k
views
download SRR*.lite.sra files using fastq-dump command
sra chipseqDB fastq-dump .lite.sra
updated 9.3 years ago by 68k • written 9.3 years ago by • 0
0
votes
0
replies
1.9k
views
Search SRA based on BioSample Attributes
ncbi sra search
10.0 years ago massacomgrao • 0
6
votes
1
reply
4.6k
views
Tutorial: Orchestrating a small, parallel, RNA-seq pre-processing workflow using R
rnaseq biocparallel workflows sra Tutorial
10.6 years ago Sean Davis 21k
6 results • Page 1 of 1
Recent ...
Replies
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
My apologies, I forgot that `design.group` is not included in the final matrix. I have corrected my answer now to give the correct full-ran…
Answer: Bile acid analysis with limpa by Gordon Smyth 53k
I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard mass spec data, then limpa …
Comment: How to convert .raw data for use in xcms by TikTsossa33ssalpc • 0
It sounds like your mzML conversion has a CV term that XCMS doesn t recognize, which often happens with newer vendor formats or outdated ms…
Comment: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace by TikTsossa33ssalpc • 0
To calculate event numbers for boolean combinations in flow cytometry, you should use a logic gating tool or a script that processes popula…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Awards • All
Popular Question to ATpoint ★ 5.0k
Popular Question to Martin Morgan 25k
Teacher to Michael Love 43k
Popular Question to A • 0
Popular Question to Lluís Revilla Sancho ▴ 760
Locations • All
WEHI, Melbourne, Australia, 3 minutes ago
United States, 23 minutes ago
Melbourne, Australia, 1 hour ago
Australia, 2 hours ago
The city by the bay, 2 hours ago
Traffic: 1352 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6