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starr
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how to analyse chip-chip on normalized data without bpmap file or how to select bpmap file for your data(data downloaded from NCBI geo)
starr
chip-chip
7.0 years ago
sudhirjadhao2009
• 0
0
votes
4
replies
1.2k
views
Two color Nucleosomes ChIP-ChIP data analysis using Ringo package.
limma
ringo
starr
8.7 years ago
ashubiochem
• 0
0
votes
1
reply
1.4k
views
Ringo Plots Only Partially Made
Ringo
affy
tilingarray
plot
starr
8.8 years ago
bruce.moran
▴ 30
0
votes
1
reply
994
views
Starr package: cmarrt.ma error
Starr
Starr
updated 10.1 years ago by
Julie Zhu
★ 4.3k • written 10.1 years ago by
Paul
▴ 10
0
votes
0
replies
951
views
Starr package: cmarrt.ma error
Starr
Starr
10.1 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.1k
views
readCelFile function in Starr is crashing R
Starr
Starr
updated 12.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 12.5 years ago by
Guest User
★ 13k
0
votes
1
reply
826
views
help with Starr
GO
Starr
GO
Starr
updated 12.9 years ago by
Martin Morgan
25k • written 12.9 years ago by
Yongde Bao
▴ 170
0
votes
4
replies
1.3k
views
Reading GFF using Starr
Starr
Starr
updated 13.1 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 13.2 years ago by
Feseha Abebe-Akele
▴ 30
0
votes
1
reply
1.6k
views
tilingArray getting started questions
GO
Yeast
tilingArray
Starr
GO
Yeast
tilingArray
Starr
13.6 years ago
Noah Dowell
▴ 410
0
votes
3
replies
1.5k
views
ChIP-chip sequence bias not removed
Normalization
vsn
Starr
Normalization
vsn
Starr
updated 13.8 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 13.8 years ago by
Edwin Groot
▴ 230
0
votes
6
replies
1.6k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast
ChIPpeakAnno
Starr
Yeast
ChIPpeakAnno
Starr
updated 13.9 years ago by
Julie Zhu
★ 4.3k • written 13.9 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
895
views
Starr - MAT normalization
Normalization
Starr
Normalization
Starr
updated 14.0 years ago by
Raphael Gottardo
▴ 40 • written 14.0 years ago by
Hans-Ulrich Klein
▴ 330
0
votes
1
reply
889
views
Ringo/Starr getProfiles function
Annotation
Starr
Annotation
Starr
updated 14.4 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 14.4 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
928
views
Ringo/Starr getProfiles function
biomaRt
Ringo
Starr
biomaRt
Ringo
Starr
updated 14.4 years ago by
Wolfgang Huber
★ 13k • written 14.4 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
806
views
Please Help with Starr Package
Normalization
Starr
Normalization
Starr
updated 14.4 years ago by
Martin Morgan
25k • written 14.4 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.2k
views
Help with Oligo Package: Extracting and Graphing
Transcription
Normalization
Yeast
probe
affy
graph
tilingArray
oligo
pdInfoBuilder
Starr
updated 14.5 years ago by
Tobias Straub
▴ 430 • written 14.5 years ago by
Noah Dowell
▴ 410
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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