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starr
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how to analyse chip-chip on normalized data without bpmap file or how to select bpmap file for your data(data downloaded from NCBI geo)
starr
chip-chip
8.8 years ago
sudhirjadhao2009
• 0
0
votes
4
replies
1.6k
views
Two color Nucleosomes ChIP-ChIP data analysis using Ringo package.
limma
ringo
starr
10.5 years ago
ashubiochem
• 0
0
votes
1
reply
1.9k
views
Ringo Plots Only Partially Made
Ringo
affy
tilingarray
plot
starr
10.6 years ago
bruce.moran
▴ 30
0
votes
1
reply
1.4k
views
Starr package: cmarrt.ma error
Starr
Starr
updated 11.9 years ago by
Julie Zhu
★ 4.3k • written 11.9 years ago by
Paul
▴ 10
0
votes
0
replies
1.2k
views
Starr package: cmarrt.ma error
Starr
Starr
11.9 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.5k
views
readCelFile function in Starr is crashing R
Starr
Starr
updated 14.3 years ago by
Kasper Daniel Hansen
★ 6.5k • written 14.3 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
help with Starr
GO
Starr
GO
Starr
updated 14.8 years ago by
Martin Morgan
25k • written 14.8 years ago by
Yongde Bao
▴ 170
0
votes
4
replies
1.8k
views
Reading GFF using Starr
Starr
Starr
updated 15.0 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 15.0 years ago by
Feseha Abebe-Akele
▴ 30
0
votes
1
reply
1.9k
views
tilingArray getting started questions
GO
Yeast
tilingArray
Starr
GO
Yeast
tilingArray
Starr
15.5 years ago
Noah Dowell
▴ 410
0
votes
3
replies
2.0k
views
ChIP-chip sequence bias not removed
Normalization
vsn
Starr
Normalization
vsn
Starr
updated 15.6 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 15.6 years ago by
Edwin Groot
▴ 230
0
votes
6
replies
2.2k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast
ChIPpeakAnno
Starr
Yeast
ChIPpeakAnno
Starr
updated 15.7 years ago by
Julie Zhu
★ 4.3k • written 15.7 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.2k
views
Starr - MAT normalization
Normalization
Starr
Normalization
Starr
updated 15.8 years ago by
Raphael Gottardo
▴ 40 • written 15.8 years ago by
Hans-Ulrich Klein
▴ 330
0
votes
1
reply
1.2k
views
Ringo/Starr getProfiles function
Annotation
Starr
Annotation
Starr
updated 16.2 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 16.2 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.3k
views
Ringo/Starr getProfiles function
biomaRt
Ringo
Starr
biomaRt
Ringo
Starr
updated 16.2 years ago by
Wolfgang Huber
★ 13k • written 16.2 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.1k
views
Please Help with Starr Package
Normalization
Starr
Normalization
Starr
updated 16.2 years ago by
Martin Morgan
25k • written 16.2 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.6k
views
Help with Oligo Package: Extracting and Graphing
Transcription
Normalization
Yeast
probe
affy
graph
tilingArray
oligo
pdInfoBuilder
Starr
updated 16.3 years ago by
Tobias Straub
▴ 430 • written 16.3 years ago by
Noah Dowell
▴ 410
16 results • Page
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Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
James W. MacDonald
68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Votes
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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