Showing : tilingarray • reset
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Mapping Affymetrix Arabidopsis Tiling Array 1.0R in Integrated Genome Browser
bioconductor affy tilingarray
7.9 years ago jmtepp • 0
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Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
9.3 years ago bruce.moran ▴ 30
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undocumented behavior in tilingArray::costMatrix [Scanned]
tilingArray tilingArray
12.2 years ago Du, Yang ▴ 10
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tilingArray getting started questions
GO Yeast tilingArray Starr GO Yeast tilingArray Starr
14.1 years ago Noah Dowell ▴ 410
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Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 14.9 years ago by ▴ 430 • written 14.9 years ago by ▴ 410
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tilingArray: error message in function segment()
tilingArray tilingArray
15.6 years ago Hui Tang ▴ 20
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tilingArray problems
Normalization GO tilingArray Normalization GO tilingArray
15.9 years ago Wolfgang Huber ★ 13k
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TilingArray Normalization
Transcription Normalization probe tilingArray Transcription Normalization probe tilingArray
updated 15.9 years ago by ★ 13k • written 15.9 years ago by ▴ 90
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tilingArray problems
tilingArray tilingArray
15.9 years ago Anjan Purkayastha ▴ 90
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applicability of tilingArray package
Normalization Yeast affy tilingArray Normalization Yeast affy tilingArray
updated 15.9 years ago by ★ 13k • written 15.9 years ago by ▴ 50
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tilingArray- normalizeByReference
probe tilingArray probe tilingArray
16.0 years ago Anjan Purkayastha ▴ 90
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combining data from two R arrays
GO Survival annotate genefilter vsn tilingArray GO Survival annotate genefilter vsn
17.0 years ago Richard Harrison ▴ 70
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running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 17.0 years ago by ▴ 230 • written 17.0 years ago by ▴ 110
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Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 17.0 years ago by ▴ 40 • written 17.0 years ago by ▴ 110
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Stuck with Yeast Tiling Array
tilingArray tilingArray
updated 17.1 years ago by ▴ 730 • written 17.1 years ago by ▴ 70
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Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 17.6 years ago by ★ 13k • written 17.6 years ago by ★ 1.3k
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Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
updated 17.6 years ago by ★ 13k • written 17.6 years ago by ★ 1.3k
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Scripts to handle array CGH data files from NimbleGen
CGH tilingArray CGH tilingArray
updated 18.1 years ago by ▴ 40 • written 18.1 years ago by ▴ 140
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FW: Cannot restore saved data in .Rdata after loading tilingArray - object 'breakpoints' not found
Cancer Breast PROcess tilingArray snapCGH Cancer Breast PROcess tilingArray snapCGH
updated 18.1 years ago by ★ 13k • written 18.1 years ago by ▴ 310
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tiling/SNP microarrays
SNP Coverage tilingArray SNP Coverage tilingArray
updated 18.3 years ago by 21k • written 18.3 years ago by ▴ 10
20 results • Page 1 of 1
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Answer: How to subset voomLmFit (MArrayLM) object? by Gordon Smyth 51k
Yes, the current behaviour is absolutely intentional. It doesn't seem to me to be meaningful or useful to try to subset the EList object au…
Answer: Need help interpreting heatmaps from limma by James W. MacDonald 67k
Heatmaps don't do any comparisons. They just plot the underlying data in a matrix and color the blocks based (in your case) on the by-gene …
Comment: Are transformed values from rlog /vst log2 normalized counts? by Eva ▴ 10
I understood exactly what you said, but I got confused with the documentation and the info that gives about rlog because it seems to be tha…
Answer: featureCounts fails to load annotation file by James W. MacDonald 67k
I imagine Wei Shi will be along later with actual help, but for now do note that you can use an SAF file instead of a GTF. It's easy enough…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 67k
That error indicates that you have a file called NCBI.sqlite in your working directory that is missing some tables. You should delete that …
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Answer: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable
Removing Effect of Covariate in Only a Subset of Samples in a Model Containing All Samples Loses Full Rank if Factor but not Numerical
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