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subjunc
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News:
Experimental data package 'seqc'
seqc
rsubread
featurecounts
subjunc
ercc
News
9.5 years ago
Wei Shi
★ 3.6k
0
votes
1
reply
1.3k
views
How to interpret the fusion.txt file output from subjunc (Rsubread package)
rsubread
subjunc
rnaseq
fusion genes
updated 8.9 years ago by
Wei Shi
★ 3.6k • written 8.9 years ago by
misic
• 0
2
votes
2
replies
1.2k
views
Failed assertion in subjunc aligner for large indels
rnaseq
subjunc
indel
updated 9.5 years ago by
Wei Shi
★ 3.6k • written 9.5 years ago by
daniel.silvestre
▴ 100
1
vote
5
replies
2.5k
views
Error: Input Files have different Amount of Reads
SubRead
Align
Subjunc
updated 3.9 years ago by
James W. MacDonald
66k • written 3.9 years ago by
abano
• 0
3
votes
6
replies
2.3k
views
How to use subjunc for differential splicing analysis?
subjunc
edgeR
2.3 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
630
views
'Killed' error during RNAseq alignment
subjunc
data.frame
myExons
Rsubread
updated 11 months ago by
ATpoint
★ 4.2k • written 11 months ago by
Sukeerthi
• 0
3
votes
1
reply
1.5k
views
Use BAM file created from subjunc function (Rsubread package) for feature counts?
rsubread
subjunc
updated 8.8 years ago by
Wei Shi
★ 3.6k • written 8.8 years ago by
Stephen Piccolo
▴ 590
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Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
• 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Answer: GSVA function
by
Robert Castelo
★ 3.3k
Hi, We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …
Votes
Answer: How to run allelic imbalance in apeglm
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
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