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subjunc
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'Killed' error during RNAseq alignment
subjunc
data.frame
myExons
Rsubread
updated 10 months ago by
ATpoint
★ 4.1k • written 10 months ago by
Sukeerthi
• 0
3
votes
6
replies
2.3k
views
How to use subjunc for differential splicing analysis?
subjunc
edgeR
2.3 years ago
Assa Yeroslaviz
★ 1.5k
1
vote
5
replies
2.4k
views
Error: Input Files have different Amount of Reads
SubRead
Align
Subjunc
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
abano
• 0
3
votes
1
reply
1.5k
views
Use BAM file created from subjunc function (Rsubread package) for feature counts?
rsubread
subjunc
updated 8.7 years ago by
Wei Shi
★ 3.6k • written 8.7 years ago by
Stephen Piccolo
▴ 590
0
votes
1
reply
1.3k
views
How to interpret the fusion.txt file output from subjunc (Rsubread package)
rsubread
subjunc
rnaseq
fusion genes
updated 8.8 years ago by
Wei Shi
★ 3.6k • written 8.8 years ago by
misic
• 0
9
votes
4
replies
2.8k
views
News:
Experimental data package 'seqc'
seqc
rsubread
featurecounts
subjunc
ercc
News
9.5 years ago
Wei Shi
★ 3.6k
2
votes
2
replies
1.2k
views
Failed assertion in subjunc aligner for large indels
rnaseq
subjunc
indel
updated 9.5 years ago by
Wei Shi
★ 3.6k • written 9.5 years ago by
daniel.silvestre
▴ 100
7 results • Page
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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