Bioconductor Sushi

Showing : sushi • reset

votes

replies

1.6k

views

sushi

updated 8.7 years ago by Steve Lianoglou ★ 13k • written 8.7 years ago by Bogdan ▴ 670

votes

replies

2.0k

views

R sushi

updated 8.3 years ago by dphansti ▴ 10 • written 8.3 years ago by javier.mendoza • 0

vote

1.1k

views

sushi plotBed

updated 8.1 years ago by dphansti ▴ 10 • written 8.3 years ago by Dimitris Polychronopoulos ▴ 80

votes

970

views

Sushi

updated 8.1 years ago by dphansti ▴ 10 • written 8.1 years ago by Till ▴ 30

votes

1.1k

views

sushi plotBed data.frame

8.0 years ago waqasnayab • 0

vote

replies

985

views

sushi

7.6 years ago snamjoshi87 ▴ 40

votes

replies

729

views

sushi plotGenes

6.3 years ago portia.mcghan • 0

votes

replies

789

views

sushi bed

5.6 years ago maltethodberg ▴ 180

8 results • Page 1 of 1

Recent ...

Replies

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…

Answer: Handling multiple differential expression comparisons by Michael Love 41k

It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…

Comment: Too many significant genes when integrating gtex and tcga by ATpoint ★ 4.1k

These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…

Votes

Print Differentially Expressed Exons From Dexseq Results

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Awards • All