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News:
Bug in ChAMP package champ.SVD() function
champ
methylation
450k
SVD
EPIC
News
7.7 years ago
Yuan Tian
▴ 90
4
votes
5
replies
2.8k
views
SVA and proportion of variance explained
sva
svd
explained variance
pca
updated 7.5 years ago by
Jeff Leek
▴ 650 • written 7.5 years ago by
Mattia
▴ 10
0
votes
2
replies
1.6k
views
Some terms in EPIC Methylation Analysis
ChAMP
SVD
Array
Slide
Sample Plate
updated 5.6 years ago by
Yuan Tian
▴ 280 • written 5.6 years ago by
yuabrahamliu
• 0
0
votes
2
replies
756
views
error in champ.SVD
svd
methylation
champ
updated 12 months ago by
shepherl
3.9k • written 12 months ago by
Giulia
• 0
0
votes
0
replies
361
views
Distance between columns vs distance between rows and SVD
distance
svd
15 months ago
Lenny186
• 0
5 results • Page
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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
gene_bioconductor
▴ 10
Thanks for your thoughtful and detailed comment, Gordon
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …
Answer: How to save the DEXSeq results
by
Michael Love
41k
If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…
Answer: Method to find pathways different between 2 groups
by
Robert Castelo
★ 3.3k
Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …
Answer: Couldn't connect to server while using "pathways"
by
James W. MacDonald
65k
As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…
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Answer: Method to find pathways different between 2 groups
Answer: Method to find pathways different between 2 groups
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
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