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error in champ.SVD
svd
methylation
champ
updated 12 months ago by
shepherl
3.9k • written 12 months ago by
Giulia
• 0
0
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0
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361
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Distance between columns vs distance between rows and SVD
distance
svd
15 months ago
Lenny186
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2
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1.6k
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Some terms in EPIC Methylation Analysis
ChAMP
SVD
Array
Slide
Sample Plate
updated 5.6 years ago by
Yuan Tian
▴ 280 • written 5.6 years ago by
yuabrahamliu
• 0
4
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5
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2.8k
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SVA and proportion of variance explained
sva
svd
explained variance
pca
updated 7.5 years ago by
Jeff Leek
▴ 650 • written 7.5 years ago by
Mattia
▴ 10
0
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2.0k
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News:
Bug in ChAMP package champ.SVD() function
champ
methylation
450k
SVD
EPIC
News
7.7 years ago
Yuan Tian
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I am working with mouse data. I don't know how to do this, but I will go through it. Can you help me with the second question? how do we …
Comment: [Mfuzz] Error in cmeans(exprs(eset)
by
Caio
• 0
You can have this problem (lines with variance equal to zero) when you run experiments and obtain the data with more samples and use fewer …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The left plot indicates you should use genome segmentation. It is what is called "nonstationary" meaning it looks like there are distinct r…
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
gene_bioconductor
▴ 10
Thanks for your thoughtful and detailed comment, Gordon
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …
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Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
Answer: Method to find pathways different between 2 groups
Answer: Method to find pathways different between 2 groups
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
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