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svd
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SVA and proportion of variance explained
sva
svd
explained variance
pca
updated 7.5 years ago by
Jeff Leek
▴ 650 • written 7.5 years ago by
Mattia
▴ 10
0
votes
2
replies
1.6k
views
Some terms in EPIC Methylation Analysis
ChAMP
SVD
Array
Slide
Sample Plate
updated 5.6 years ago by
Yuan Tian
▴ 280 • written 5.6 years ago by
yuabrahamliu
• 0
0
votes
2
replies
756
views
error in champ.SVD
svd
methylation
champ
updated 12 months ago by
shepherl
3.9k • written 12 months ago by
Giulia
• 0
0
votes
1
reply
2.0k
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News:
Bug in ChAMP package champ.SVD() function
champ
methylation
450k
SVD
EPIC
News
7.7 years ago
Yuan Tian
▴ 90
0
votes
0
replies
361
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Distance between columns vs distance between rows and SVD
distance
svd
15 months ago
Lenny186
• 0
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Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Comment: Help with running egsea()
by
James W. MacDonald
65k
I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.
Answer: Help with running egsea()
by
James W. MacDonald
65k
There are no arguments to `egsea.base`, as it is meant only as a helper function to return the different methods. In addition, if you are u…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I am working with mouse data. I don't know how to do this, but I will go through it. Can you help me with the second question? how do we …
Votes
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
Answer: How to save the DEXSeq results
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