Biostar Symbol

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ENTREZID SYMBOL AnnotationDbi org.Hs.eg.db

updated 10 months ago by Gordon Smyth 44k • written 10 months ago by bastien_chassagnol • 0

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393

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biomart go r bioconductor symbol

2.3 years ago foehn ▴ 80

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ensembl symbol hgnc biomart

updated 2.6 years ago by James W. MacDonald 58k • written 2.6 years ago by foehn ▴ 80

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603

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symbol

updated 4.7 years ago by Guido Hooiveld ★ 3.1k • written 4.7 years ago by farahqureshi5 • 0

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626

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Pathview symbol

5.3 years ago sofia.figueiredo ▴ 10

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conversion symbol entrez

updated 6.2 years ago by James W. MacDonald 58k • written 6.2 years ago by dalloliogm ▴ 40

6 results • Page 1 of 1

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Answer: tximport question on what counts to use for LogFC calculations by swbarnes2 ▴ 920

CPMs can't be used for proper DE assessments. But you can't do proper DE assessments with 1 vs 1 sample either, even if you had counts pro…

Comment: getBM error in the biomaRt R package by arungowda9738 • 0

Hello Mike, It's working! Thank you so much. Cheers, Arun

Comment: DESeq2 degrees of freedom by Michael Love 35k

We don’t use expanded model matrices in DESeq2 anymore. The vignette and workflow never use them and they are essentially deprecated.

Comment: Problem getting soft threshold power using WGCNA for RNA-seq data by jms2520 • 0

I am not sure if it is due to the fact that I am using pre-normalized data from my RNA-seq and not using fpkm but rather log counts per mil…

Comment: DESeq2 degrees of freedom by galen.seilis • 0

Please expand on 'why' these expanded model matrices can be ignored.

Votes

Answer: betaPrior and lfcShrink

using duplicateCorrelation with limma+voom for RNA-seq data

A: Random Effect in DESeq2

C: dream vignette says limma-voom repeated measures two-group comparison needs two

Answer: edgeR shows different results for same dataset

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