Bioconductor Tcga cnv

Showing : tcga cnv • reset

0

votes

5

replies

9.1k

views

TCGA CNV correlation between mRNA exprssion and CNV

updated 9.7 years ago by spulido99 • 0 • written 10.6 years ago by ycding ▴ 20

0

votes

4

replies

2.4k

views

cn.mops cnvtools tcga cnv

updated 10.0 years ago by Günter Klambauer ▴ 540 • written 10.0 years ago by vakul.mohanty ▴ 20

27

votes

21

replies

26k

views

tcga cnv gene symbol coordinate

updated 3.0 years ago by James W. MacDonald 68k • written 10.5 years ago by NS ▴ 60

3 results • Page 1 of 1

Recent ...

Replies

Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k

The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…

Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Votes

A: Multi-level experiments in Limma

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

Awards • All