Bioconductor Tcga cnv

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TCGA CNV correlation between mRNA exprssion and CNV

updated 8.9 years ago by spulido99 • 0 • written 9.8 years ago by ycding ▴ 10

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cn.mops cnvtools tcga cnv

updated 9.2 years ago by Günter Klambauer ▴ 540 • written 9.2 years ago by vakul.mohanty ▴ 20

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tcga cnv gene symbol coordinate

updated 2.1 years ago by James W. MacDonald 67k • written 9.7 years ago by NS ▴ 60

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Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k

Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0

After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```

Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

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