Bioconductor Tcga cnv

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TCGA CNV correlation between mRNA exprssion and CNV

updated 8.7 years ago by spulido99 • 0 • written 9.6 years ago by ycding ▴ 10

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cn.mops cnvtools tcga cnv

updated 9.0 years ago by Günter Klambauer ▴ 540 • written 9.0 years ago by vakul.mohanty ▴ 20

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tcga cnv gene symbol coordinate

updated 24 months ago by James W. MacDonald 67k • written 9.5 years ago by NS ▴ 60

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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0

Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

Answer: Annotation for EPICv2 by icecreamlover • 0

Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…

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