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Soft-threshold in WGCNA
wgcna
network
bicor
threshold
updated 3.7 years ago by
Peter Langfelder
★ 3.0k • written 3.7 years ago by
ag1805x
▴ 80
0
votes
1
reply
1.0k
views
Copy ratio threshold for calling actual CNV
PureCN
copy-ratio
threshold
updated 5.6 years ago by
markus.riester
▴ 130 • written 5.6 years ago by
twtoal
▴ 10
1
vote
1
reply
1.8k
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WGCNA - Choosing the best threshold
wgcna
sft
picksoftthreshold
threshold
rnaseq
updated 6.3 years ago by
Peter Langfelder
★ 3.0k • written 6.3 years ago by
Fabricio Almeida-Silva
▴ 40
1
vote
1
reply
1.2k
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SPIA plotP giving error
SPIA
plotP
threshold
7.5 years ago
docpriya21
▴ 10
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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
gene_bioconductor
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Thanks for your thoughtful and detailed comment, Gordon
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …
Answer: How to save the DEXSeq results
by
Michael Love
41k
If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…
Answer: Method to find pathways different between 2 groups
by
Robert Castelo
★ 3.3k
Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …
Answer: Couldn't connect to server while using "pathways"
by
James W. MacDonald
65k
As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…
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Answer: Method to find pathways different between 2 groups
Answer: Method to find pathways different between 2 groups
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
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