Bioconductor Time-series

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time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by Debebe • 0

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618

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DESeq2 time-series timecoursedata timecourse multifactorial

updated 17 months ago by Michael Love 41k • written 18 months ago by arshad1292 • 0

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787

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time-series mfuzz replace=FALSE

23 months ago soda ▴ 80

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820

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half-life DESeq2 time-series

updated 3.1 years ago by Michael Love 41k • written 3.1 years ago by Xianjun Dong ▴ 10

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1.9k

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deseq2 cancer rna-seq time-series

4.8 years ago mah19 • 0

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2.8k

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deseq2 time-series design matrix edger

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by Assa Yeroslaviz ★ 1.5k

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1.0k

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deseq2 time-series without replicate

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by bahlv • 0

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1.3k

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deseq2 timecourse multiple time points time-series

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by zhangfei-123 • 0

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1.5k

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DESeq2 time-series

updated 6.5 years ago by Michael Love 41k • written 6.5 years ago by gtechbio ▴ 10

9 results • Page 1 of 1

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Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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