Bioinformatics Answers

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Mfuzz

updated 5 months ago by James W. MacDonald 56k • written 5 months ago by syed.imtiazaziz • 0

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125

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mfuzz normalization

22 months ago xizhang • 0

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691

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deseq2 rnaseq mfuzz

updated 2.8 years ago by Michael Love 32k • written 2.8 years ago by rbenel ▴ 20

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260

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mfuzz fold change log2 STANDARDISATION

2.9 years ago prakashpandey1111 • 0

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246

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mfuzz

2.9 years ago prakashpandey1111 • 0

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687

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deseq2 mfuzz differential expression timecourse

updated 4.6 years ago by Michael Love 32k • written 4.6 years ago by Assa Yeroslaviz ★ 1.5k

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1.1k

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cluster mfuzz gene names

updated 5.1 years ago by Assa Yeroslaviz ★ 1.5k • written 5.1 years ago by thomas.dobrenel • 0

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4.5k

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mfuzz clustering bioinformatics proteomics timecourse

updated 5.2 years ago by Laurent Gatto 1.5k • written 5.2 years ago by under-waterworld • 0

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486

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Mfuzz

5.3 years ago musically.ut • 0

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812

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Clustering Mfuzz Clustering Mfuzz

7.0 years ago Assa Yeroslaviz ★ 1.5k

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626

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Clustering Mfuzz Clustering Mfuzz

10.1 years ago Maciej Jończyk ▴ 720

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1.6k

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Mfuzz Mfuzz

10.1 years ago Maciej Jończyk ▴ 720

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845

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Mfuzz Mfuzz

updated 12.0 years ago by James W. MacDonald 56k • written 12.0 years ago by dorothyc ▴ 140

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726

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Clustering Mfuzz Clustering Mfuzz

updated 12.1 years ago by James W. MacDonald 56k • written 12.1 years ago by dorothyc ▴ 140

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2.6k

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Clustering Mfuzz Clustering Mfuzz

updated 12.2 years ago by Steve Pederson ▴ 60 • written 12.2 years ago by gregory voisin ▴ 430

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Comment: Limma paired analysis design question by jefflincoln4 • 0

Thank you Gordon. One more thing, why use the log of blood iron concentration?

Answer: Limma paired analysis design question by Gordon Smyth 42k

Just put (log) blood iron concentration and `pair` in the design matrix. limma will work with differences automatically -- there's no need…

Comment: Extracting the findPalindrome() results by Hervé Pagès 14k

Also, you have a point: the output of `Biostrings::findPalindromes()` is an XStringViews object and `as.data.frame()` does a poor job on th…

Comment: Compute fgsea with my own database with R version 4.0.2 by assaron ▴ 190

I'm not sure what would be the best course of action in your case, if there is one at all, but I'd suggest to keep the ranking on the gene-…

Comment: Error installing Deseq2 by ATpoint ▴ 590

Go through the error logs and find the first error, this is where you have to start debugging, this here is just the consequences of the in…