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trackViewer
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reset
4
votes
3
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875
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trackviewer gi2track not found
trackv
trackViewer
2.3 years ago • updated 2.2 years ago
tomas.rodriguez
▴ 10
3
votes
3
replies
896
views
trackViewer assigning track colors
trackViewer
track
updated 2.2 years ago by
Ou, Jianhong
★ 1.3k • written 2.2 years ago by
tomas.rodriguez
▴ 10
1
vote
3
replies
1.2k
views
trackViewer peak visualization
trackViewer
2.5 years ago
liruiradiant
• 0
1
vote
8
replies
1.6k
views
trackViewer, the interactive version, can't view negative values in bigWig
trackViewer
updated 4.7 years ago by
Ou, Jianhong
★ 1.3k • written 4.7 years ago by
liruiradiant
• 0
1
vote
3
replies
1.0k
views
trackViewer: how to make lolliplots for methylation data
trackViewer
methylation
lolliplot
4.5 years ago
patriciasolesanchez
• 0
0
votes
2
replies
1.7k
views
trackViewer bigWig smoothing
trackViewer
2.5 years ago
liruiradiant
• 0
0
votes
2
replies
958
views
trackViewer font
trackViewer
2.5 years ago
liruiradiant
• 0
0
votes
1
reply
275
views
Incorrect display of Y-axis
trackViewer
updated 5 months ago by
Ou, Jianhong
★ 1.3k • written 5 months ago by
Bastien
• 0
0
votes
1
reply
975
views
trackviewer lolliplot pie.stack
lolliplot
trackviewer
updated 6.9 years ago by
Ou, Jianhong
★ 1.3k • written 6.9 years ago by
manuel.x.duval
• 0
0
votes
0
replies
465
views
How to use xscale
trackViewer
24 months ago
tomas.rodriguez
▴ 10
0
votes
1
reply
961
views
Attempts to create a lolliplot from 1000 genomes .popvcf file using trackViewer generating the error, "Error: all(width(SNP.gr[[i]]) == 1) is not TRU…
bioconductor
R
trackviewer
updated 6.4 years ago by
Ou, Jianhong
★ 1.3k • written 6.4 years ago by
rop.jesse
• 0
0
votes
1
reply
627
views
Can I use trackViewer to generate methylation lolliops with my own gene models and assembly?
trackViewer
updated 4.5 years ago by
Ou, Jianhong
★ 1.3k • written 4.5 years ago by
martinson.john
• 0
0
votes
3
replies
802
views
TrackViewer Vignette Err: attr must be a slot name of xscale object
trackViewer
4.4 years ago
liruiradiant
• 0
0
votes
3
replies
767
views
trackViewer: File format detection
trackViewer
trackview
updated 3.4 years ago by
Ou, Jianhong
★ 1.3k • written 3.4 years ago by
tomas.rodriguez
▴ 10
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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