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Docker usage with Trio Bioconductor Package
VariantAnnotation docker trio
updated 19 months ago by ★ 4.6k • written 19 months ago by • 0
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error in read.pedfile
trio
8.0 years ago nuch_tiwaporn • 0
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AllelicImbalance with VCFs?
RNASeq Cancer trio AllelicImbalance RNASeq Cancer trio AllelicImbalance
updated 10.9 years ago by ▴ 20 • written 10.9 years ago by ▴ 10
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Error in GAGE analysis
trio trio
12.8 years ago Javerjung Sandhu ▴ 200
4 results • Page 1 of 1
Recent ...
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Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Hervé Pagès 16k
> I have requested gDNAx developers for a feature request to turn off seqlevelsStyle(txdb) Yes, that's the right course of action. `seqlev…
Comment: ISO a solution to rank-order introns by transcript by mat149 ▴ 80
Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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