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twochannel
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5
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10
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Limma Design Matrix for two channel agilent arrays (direct experimental design)
Limma
limma design matrix
agilent
twochannel
8.3 years ago
pm2015
• 0
3
votes
8
replies
1.3k
views
Design matrix for a two-color experimental design testing for time effect on 3 treated cell-lines, each with its own time=0 control
limma
microarray
design matrix
twochannel
updated 5.7 years ago by
Gordon Smyth
50k • written 5.7 years ago by
rubi
▴ 110
3
votes
1
reply
2.9k
views
WGCNA: single channel microarray, one categorical covariate, how to apply it?
wgcna
twochannel
onechannel
updated 9.5 years ago by
Peter Langfelder
★ 3.0k • written 9.5 years ago by
jeiroje
▴ 20
3
votes
9
replies
2.0k
views
Single channel analysis of two-color agilent array using limma
agilent
limma
twochannel
microarray
updated 8.6 years ago by
Gordon Smyth
50k • written 8.6 years ago by
pm2015
• 0
1
vote
2
replies
2.1k
views
summarization for G4110B two colors agilent array: how to?
marray
agilent
twochannel
normalization
limma
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
Andrea Grilli
▴ 240
0
votes
1
reply
1.3k
views
Downloading Twochannel microarray data from ArrayExpress
arrayexpress
twochannel
microarray
6.5 years ago
Andy91
▴ 60
0
votes
1
reply
1.2k
views
read.maimages problem under sun ?
Microarray
OneChannel
TwoChannel
DifferentialExpression
Preprocessing
QualityControl
affy
17.0 years ago
Amin Moghaddasi
▴ 130
0
votes
2
replies
3.5k
views
failure in GDS2eSet() in package GEOquery
Microarray
OneChannel
TwoChannel
DataImport
bridge
GEOquery
Microarray
OneChannel
bridge
updated 16.5 years ago by
Sean Davis
21k • written 16.5 years ago by
Wittner, Ben
▴ 290
0
votes
4
replies
1.4k
views
snapCGH fails in runBioHMM
aCGH
Microarray
TwoChannel
Cancer
limma
aCGH
snapCGH
aCGH
Microarray
TwoChannel
Cancer
updated 15.0 years ago by
Wolfgang Raffelsberger
▴ 160 • written 15.0 years ago by
Ramon Diaz
★ 1.1k
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Answer: Dominance Index for Shotgun Metagenomics Data
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Leo Lahti
▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
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• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
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For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
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ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
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41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
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biomaRt error: database disk image is malformed
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