Showing : marray • reset
1
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summarization for G4110B two colors agilent array: how to?
marray agilent twochannel normalization limma
updated 9.3 years ago by 50k • written 9.3 years ago by ▴ 240
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How does one deal with spatial effects detected on single channel microarrays?
Microarray Normalization hu6800 affy gcrma marray nnNorm Harshlight Microarray hu6800
10.6 years ago Scott Robinson ▴ 130
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6
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1.6k
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How does one deal with spatial effects detected on single channel microarrays?
Microarray Normalization affy marray nnNorm Microarray Normalization affy marray nnNorm
updated 10.7 years ago by ★ 3.9k • written 10.7 years ago by ★ 13k
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966
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Package/Function for Single Channel Microarray Spatial Normalization?
marray OLIN marray OLIN
10.7 years ago Guest User ★ 13k
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1
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1.8k
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How to subtract the background from foreground values in GenePix files
Normalization limma marray Normalization limma marray
updated 10.8 years ago by 65k • written 10.8 years ago by ★ 13k
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3
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1.3k
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Normalize background on marray Agilent object
Normalization limma PROcess marray Normalization limma PROcess marray
updated 10.8 years ago by 50k • written 10.9 years ago by ▴ 50
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3
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1.5k
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Normalize background on marray Agilent object
marray marray
10.9 years ago Guillermo Marco Puche ▴ 50
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1.0k
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Agilent Dual channel array input & marray
marray marray
11.0 years ago Guillermo Marco Puche ▴ 50
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1
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1.2k
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Unexpected output from Limma background subtraction & Normalization
Microarray Normalization limma marray puma Microarray Normalization limma marray puma
updated 3.3 years ago by 50k • written 11.0 years ago by ▴ 20
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1
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1.2k
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Unexpected Results from Limma background subtraction & marray normalizatoin
Microarray Normalization limma marray Microarray Normalization limma marray
updated 3.3 years ago by 50k • written 11.1 years ago by ▴ 20
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908
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NAs introduced by marrayNorm after background subtraction with Limma
Normalization probe limma marray Normalization probe limma marray
11.1 years ago Guest User ★ 13k
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1.3k
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normalizing two-color Agilent data from GEO...
marray marray
11.6 years ago Alan Derr ▴ 50
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1
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2.1k
views
Error by using gpr data with marray
limma marray ArrayExpress limma marray ArrayExpress
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ★ 13k
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Error with read.SMD() of marray
marray marray
12.5 years ago Guest User ★ 13k
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0
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944
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load single-channel microarray
marray marray
12.6 years ago Paz Tapia Ramirez ▴ 150
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2
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1.1k
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M values; and dist functions
marray marray
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 560
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2
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1.4k
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gcrma - u133aaofav2probe error
Microarray gcrma marray Microarray gcrma marray
updated 13.2 years ago by 65k • written 13.2 years ago by ▴ 10
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2
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6.2k
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Error in Heatmap: Could not find function "heatmap.2"
PROcess marray PROcess marray
updated 13.8 years ago by ▴ 830 • written 13.8 years ago by ▴ 40
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875
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maPalette() and the number of colors returned (bug?)
marray marray
13.9 years ago Ali Tofigh ▴ 30
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1
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1.1k
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Could I use "genefilter" package for MArray data ?
genefilter limma marray genefilter limma marray
updated 14.0 years ago by ★ 13k • written 14.0 years ago by ▴ 230
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0
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856
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MArray into data.frame for SPIA package
limma marray SPIA limma marray SPIA
14.2 years ago Gordon Smyth 50k
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11
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1.9k
views
Issue with limma and normalization of Agilent data generated with a 20-bit scan
Normalization limma marray Normalization limma marray
updated 14.2 years ago by 50k • written 14.2 years ago by ▴ 130
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1
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1.4k
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Bug in vsn2
limma marray limma marray
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 50
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1
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1.0k
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Summarization of cDNA microarray data
marray marray
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 10
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1
reply
1.1k
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Agilent miRNA
miRNA marray miRNA marray
updated 15.1 years ago by ▴ 40 • written 15.1 years ago by ▴ 200
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1
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1.1k
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problems with marray and gpr files
marray marray
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 40
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0
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870
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Moe430A and Moe430B join
moe430a moe430b mouse4302 gcrma marray moe430a moe430b mouse4302 gcrma marray
15.8 years ago Matyas Flemr ▴ 10
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6
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1.7k
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limma and marray data import problem
Microarray Normalization limma PROcess marray Microarray Normalization limma PROcess
updated 15.9 years ago by 50k • written 15.9 years ago by ▴ 90
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2
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1.3k
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Fwd: Question about normalizing one color Agilent array using loess
Microarray Genetics Normalization limma marray Microarray Genetics Normalization limma
updated 16.0 years ago by ★ 13k • written 16.0 years ago by ▴ 30
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1
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953
views
Input to vsn or limma of genepix file missing 635 columns
Annotation Normalization Biobase affy vsn limma marray convert Annotation Normalization
updated 16.0 years ago by ▴ 30 • written 16.0 years ago by 50k
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1
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1.5k
views
How to read a data.frame into limma or marray
Microarray Normalization limma marray Microarray Normalization limma marray
updated 16.4 years ago by ▴ 450 • written 16.4 years ago by ▴ 160
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1
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544
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One directional spatial normalisation for microarray data
marray marray
updated 16.5 years ago by ★ 2.4k • written 16.5 years ago by ★ 3.4k
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3
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1.4k
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tweaks for the heatmap ()?
Clustering marray Clustering marray
updated 16.5 years ago by ▴ 510 • written 16.5 years ago by ▴ 270
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4
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1.3k
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Agilent CGH data
CGH arrayQuality marray CGH arrayQuality marray
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
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1
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1.2k
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DNAcopy package, craeting CNA object
CGH marray DNAcopy CGH marray DNAcopy
updated 16.7 years ago by 21k • written 16.7 years ago by ▴ 230
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1
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1.1k
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creating a copy number array data object in DNA copy
GO marray GO marray
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 230
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8
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3.2k
views
Reading Agilent files using read.maimages
Survival DynDoc genefilter tkWidgets affy vsn marray convert ArrayExpress Survival affy
updated 16.7 years ago by ▴ 20 • written 16.8 years ago by ▴ 100
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1
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3.2k
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RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 16.8 years ago by 25k • written 16.8 years ago by ▴ 30
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1
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1.7k
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create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 16.8 years ago by 25k • written 16.8 years ago by ▴ 30
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2
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1.2k
views
Error with arrayQuality
Microarray Cancer hexbin limma marray convert Microarray Cancer hexbin limma marray
updated 16.8 years ago by ★ 7.4k • written 16.8 years ago by ▴ 50
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1
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1.1k
views
marray layout
Microarray marray Microarray marray
updated 16.9 years ago by ▴ 130 • written 16.9 years ago by ▴ 40
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1
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1.2k
views
tcl/tk and biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 30
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0
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908
views
tcl/tk dependency of biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
17.0 years ago grischa tödt ▴ 30
0
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0
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912
views
marray and limma error with lmFit
Microarray limma marray Microarray limma marray
17.1 years ago Gordon Smyth 50k
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0
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1.1k
views
marray and limma error with lmFit
Microarray Biobase DynDoc widgetTools limma arrayQuality marray convert Microarray DynDoc
17.1 years ago Paquet, Agnes ▴ 500
0
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2
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1.5k
views
marray: problems loading genepix-files
marray marray
updated 17.2 years ago by ▴ 130 • written 17.2 years ago by ▴ 310
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1
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1.1k
views
Help with GenePix files
Normalization marray GLAD Normalization marray GLAD
updated 17.2 years ago by ★ 7.4k • written 17.2 years ago by ▴ 310
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0
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1.4k
views
marray and limma error with lmFit
limma marray limma marray
17.2 years ago Gordon Smyth 50k
0
votes
0
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983
views
normalizeBetweenArrays gives an error
Normalization marray convert Normalization marray convert
17.5 years ago Gordon Smyth 50k
0
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0
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965
views
problems reading Illumina files using BeadExplorer
affy widgetTools limma marray convert affyio BeadExplorer affy widgetTools limma marray
17.6 years ago Vitalina Komashko ▴ 10
50 results • Page 1 of 1
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Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE by maria.soler • 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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