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vanillaice
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Where is 'constructOligoSetFrom' or 'constructOligoSetListFrom' function?
crlmm
vanillaice
9.8 years ago
Shi, Tao
▴ 720
0
votes
4
replies
1.6k
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Trouble following the first 5 lines of vanillaICE tutorial?
SNP6
crlmm
vanillaice
vanillaice crlmm
cnv
updated 9.8 years ago by
rscharpf
• 0 • written 9.8 years ago by
cafelumiere12
▴ 20
0
votes
0
replies
1.2k
views
Copy number analysis
SNP
affy
VanillaICE
SNP
affy
VanillaICE
13.0 years ago
Rob Scharpf
▴ 250
0
votes
2
replies
1.3k
views
VanillaICE
Proteomics
VanillaICE
Proteomics
VanillaICE
updated 13.4 years ago by
Valerie Obenchain
★ 6.8k • written 13.4 years ago by
Francesco Mancuso
▴ 110
0
votes
0
replies
1.2k
views
Annotation for Mouse Affy SNP arrays (MOUSEDIVm520650)?
Annotation
Cancer
VanillaICE
crlmm
Annotation
Cancer
VanillaICE
crlmm
13.5 years ago
Daniel Rico
▴ 110
0
votes
0
replies
1.5k
views
Question about using oligo and SNPchip for copy number analysis
SNP
Cancer
graph
oligo
SNPchip
oligoClasses
VanillaICE
crlmm
SNP
Cancer
graph
oligo
15.9 years ago
Min-Han Tan
▴ 40
0
votes
4
replies
1.7k
views
Creating a new instance of oligoSnpSet
Annotation
Cancer
Breast
VanillaICE
copynumber
Annotation
Cancer
Breast
VanillaICE
16.3 years ago
Steven McKinney
▴ 310
7 results • Page
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Comment: DiffBind custom normalization factor
by
Abbie
• 0
Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
by
James W. MacDonald
68k
All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Comment: Using TPM from tximport of Salmon output for singscore
by
Kent
• 0
Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…
Comment: Using TPM from tximport of Salmon output for singscore
by
Michael Love
43k
For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…
Comment: DESeq2 model - How to test case/control time course model when taking account wi
by
Michael Love
43k
I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …
Votes
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
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