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Where is 'constructOligoSetFrom' or 'constructOligoSetListFrom' function?
crlmm vanillaice
10.6 years ago Shi, Tao ▴ 720
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4
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Trouble following the first 5 lines of vanillaICE tutorial?
SNP6 crlmm vanillaice vanillaice crlmm cnv
updated 10.7 years ago by • 0 • written 10.7 years ago by ▴ 20
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Copy number analysis
SNP affy VanillaICE SNP affy VanillaICE
13.9 years ago Rob Scharpf ▴ 250
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2
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1.5k
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VanillaICE
Proteomics VanillaICE Proteomics VanillaICE
updated 14.2 years ago by ★ 6.8k • written 14.2 years ago by ▴ 110
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Annotation for Mouse Affy SNP arrays (MOUSEDIVm520650)?
Annotation Cancer VanillaICE crlmm Annotation Cancer VanillaICE crlmm
14.3 years ago Daniel Rico ▴ 110
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Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
16.7 years ago Min-Han Tan ▴ 40
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Creating a new instance of oligoSnpSet
Annotation Cancer Breast VanillaICE copynumber Annotation Cancer Breast VanillaICE
17.2 years ago Steven McKinney ▴ 310
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Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k
Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/
Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k
apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k
I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0
Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…
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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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