Bioconductor VariancePartition

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variancepartition lme4 mixedmodel

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.7 years ago by c.taylor • 0

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dream variancePartition limma differential expression repeated measures

updated 4.6 years ago by Gordon Smyth 50k • written 4.6 years ago by hermidalc ▴ 20

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845

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variancePartition mixedmodel dream

8 months ago hayleyw • 0

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limma voom variancePartition dream

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.9 years ago by Ben ▴ 50

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1.5k

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DESeq2 variancePartition

13 months ago • updated 12 months ago Weiqian ▴ 10

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846

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variancePartition RNASeqData limma BulkRNAseq RNASeq

updated 5 months ago by Gordon Smyth 50k • written 7 months ago by Gimena • 0

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variancePartition limma BiocParallel

3.0 years ago Junghoon ▴ 10

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1.3k

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edgeR limma variancePartition

updated 2.8 years ago by Gordon Smyth 50k • written 2.8 years ago by jackgisby • 0

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BiocParallel limma variancePartition

3.0 years ago • updated 2.9 years ago Junghoon ▴ 10

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610

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variancePartition BiocParallel

4 months ago hayleyw • 0

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1.3k

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limma variancePartition

updated 2.9 years ago by Gordon Smyth 50k • written 2.9 years ago by jarod ▴ 30

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961

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variancePa variancePartition limma-voom dream

updated 14 months ago by Gordon Smyth 50k • written 14 months ago by Le • 0

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693

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RNAseq variancePartition edgeR dream

14 months ago • updated 13 months ago DH • 0

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792

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variancePartition limma

3.0 years ago Junghoon ▴ 10

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451

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expression variancePartition edgeR

21 months ago Jonathan • 0

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220

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variancePartition

19 days ago Le • 0

16 results • Page 1 of 1

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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…

Answer: meffil.snp.concordance by James W. MacDonald 65k

This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…

Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k

Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…

Votes

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

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