Bioconductor Variancepartition

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dream variancePartition limma differential expression repeated measures

updated 4.6 years ago by Gordon Smyth 50k • written 4.6 years ago by hermidalc ▴ 20

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1.7k

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limma voom variancePartition dream

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.9 years ago by Ben ▴ 50

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1.5k

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variancepartition lme4 mixedmodel

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.7 years ago by c.taylor • 0

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1.3k

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limma variancePartition

updated 2.9 years ago by Gordon Smyth 50k • written 2.9 years ago by jarod ▴ 30

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669

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variancePartition BiocParallel

5 months ago hayleyw • 0

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235

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variancePartition

4 weeks ago • updated 29 days ago Le • 0

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810

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variancePartition limma

3.1 years ago Junghoon ▴ 10

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1.6k

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DESeq2 variancePartition

13 months ago • updated 12 months ago Weiqian ▴ 10

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1.3k

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edgeR limma variancePartition

updated 2.8 years ago by Gordon Smyth 50k • written 2.8 years ago by jackgisby • 0

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875

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variancePartition RNASeqData limma BulkRNAseq RNASeq

updated 5 months ago by Gordon Smyth 50k • written 7 months ago by Gimena • 0

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711

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RNAseq variancePartition edgeR dream

14 months ago DH • 0

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1.2k

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variancePartition limma BiocParallel

3.1 years ago Junghoon ▴ 10

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861

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variancePartition mixedmodel dream

8 months ago hayleyw • 0

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459

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expression variancePartition edgeR

21 months ago Jonathan • 0

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977

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variancePa variancePartition limma-voom dream

updated 14 months ago by Gordon Smyth 50k • written 14 months ago by Le • 0

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1.1k

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BiocParallel limma variancePartition

3.1 years ago • updated 2.9 years ago Junghoon ▴ 10

16 results • Page 1 of 1

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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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