Showing : voomWithQualityWeights • reset
6
votes
5
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461
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How to know if I should use voomWithQualityWeights() or not?
limma RNA-Seq voom voomWithQualityWeights edgeR
updated 18 months ago by 43k • written 18 months ago by • 0
2
votes
2
replies
371
views
voomWithQualityWeights together with covariate in design matrix
limma voom RNA-seq voomWithQualityWeights
updated 2.3 years ago by ▴ 1000 • written 2.3 years ago by ▴ 90
2
votes
2
replies
457
views
Different results from limma depending on whether or not I have an intercept term in my model
limma lmfit voom limma design matrix voomwithqualityweights
updated 2.8 years ago by 43k • written 2.8 years ago by ▴ 10
5
votes
5
replies
695
views
t-statistic from various limma-approaches does not follow the theoretical distribution
limma t-statistic voom voomwithqualityweights robust regression
2.8 years ago brynedal ▴ 30
2
votes
4
replies
927
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limma-voom WithQualityWeights and duplicateCorrelation in RNA-seq
voomwithqualityweights limma voom duplicatecorrelation
updated 3.2 years ago by ★ 27k • written 3.2 years ago by ▴ 70
18
votes
3
replies
1.4k
views
cameraPR vs geneSetTest and ROAST/CAMERA in general
limma voomwithqualityweights gene set analysis
updated 3.5 years ago by ★ 27k • written 3.5 years ago by ▴ 70
1
vote
1
reply
2.0k
views
voomWithQualityWeights, design and weights
voom limma-voom voomwithqualityweights rna-seq
updated 3.6 years ago by ▴ 1000 • written 3.6 years ago by ▴ 10
2
votes
8
replies
2.4k
views
How to extract the voom normalized value for each observation?
voomWithQualityWeights output
updated 3.8 years ago by 43k • written 3.8 years ago by ▴ 50
5
votes
2
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631
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voomWithQualityWeights: question on min. number of replicates per group + design to use
limma edger voom voomWithQualityWeights limma-voom
updated 3.8 years ago by 43k • written 3.8 years ago by ★ 3.0k
9 results • Page 1 of 1
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Answer: DEseq2 time-series design. by swbarnes2 ▴ 850
I strongly recommend you put your data down for a couple of days, get the vignette or another DESeq tutorial, and work through a couple sam…
Comment: GenomicScores package: availableGScores and getGScores functions not working by Robert Castelo ★ 2.7k
hi, Indeed you were using an outdated version of the package. Regarding how to install current release version, please read first carefull…
Answer: Unable to install Bioconductor packages by shepherl 2.8k
This normally occurs when R was installed with a different account or an admin account. Unless on this account you won't be able to update…
Comment: GenomicScores package: availableGScores and getGScores functions not working by nattzy94 • 0
I tried to install the latest version of GenomicScores (2.4.0) by downloading the tar.gz and running `install.packages('GenomicScores_2.4.0…
Comment: GenomicScores package: availableGScores and getGScores functions not working by nattzy94 • 0
Thanks for the quick response. Below is my sessionInfo R version 3.6.2 (2019-12-12) Platform: x86_64-apple-darwin15.6.0 (64-bit) …
Votes
A: Differential expression analysis starting from TPM data
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Comment: "full model matrix is less than full rank"
A: Extracting normalized counts in MEDIPS
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