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limma 2x2 factorial contrast.matrix
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14.0 years ago Ben Nota ▴ 10
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interaction term contrast in Weaver mutant example of LIMMA manual
limma weaver limma weaver
updated 14.7 years ago by 65k • written 14.7 years ago by ▴ 250
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subscript out of bounds halting error when Sweaving with weaver And GOstats' HyperGTest
GO weaver GO weaver
15.6 years ago Elliot Kleiman ▴ 150
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Limma user’s guide example data sets
Microarray limma limmaGUI weaver Microarray limma limmaGUI weaver
updated 15.9 years ago by ▴ 130 • written 15.9 years ago by ▴ 450
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Limma user’s guide example data sets
Microarray limma weaver Microarray limma weaver
15.9 years ago Wang, Jixin ▴ 130
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Limma - using both array and spot weights in lmFit
Genetics limma weaver Genetics limma weaver
17.0 years ago Gordon Smyth 50k
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Advice on how to compare two different sources on cDNA
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17.3 years ago Marcelo Laia ▴ 450
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limma example Weaver Data
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18.9 years ago Gordon Smyth 50k
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limma example Weaver Data
limma weaver limma weaver
updated 19.0 years ago by 50k • written 19.0 years ago by ▴ 100
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Controls and duplicate correlation
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19.0 years ago lepalmer@notes.cc.sunysb.edu ▴ 40
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design in mixed ref and dye-swap experiment
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updated 19.1 years ago by 50k • written 19.1 years ago by ▴ 50
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limma design matrix
GO limma PROcess weaver GO limma PROcess weaver
20.2 years ago Gordon Smyth 50k
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limma missing files
weaver weaver
updated 21.0 years ago by 50k • written 21.0 years ago by ★ 1.4k
13 results • Page 1 of 1
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
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A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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