Bioconductor Wgcna package

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wgcna WGCNA wgcna package

5.6 years ago coyoung ▴ 10

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wgcna wgcna package modulepreservation

written 6.8 years ago by bekah ▴ 40

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wgcna wgcna package

6.8 years ago Jack • 0

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wgcna package wgcna

6.8 years ago anni.djurhuus • 0

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wgcna package TCGA LocusLinkID genecode ensembl

updated 6.9 years ago by James W. MacDonald 68k • written 6.9 years ago by modarzi ▴ 10

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wgcna package software error

updated 6.9 years ago by Peter Langfelder ★ 3.0k • written 6.9 years ago by giuseppe0525 • 0

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wgcna wgcna package consensus

7.0 years ago 2323982403 ▴ 60

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wgcna wgcna package

7.0 years ago antoinefelden ▴ 10

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WGCNA wgcna package

updated 7.0 years ago by Peter Langfelder ★ 3.0k • written 7.0 years ago by bdy8 ▴ 10

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wgcna wgcna package

7.1 years ago 2323982403 ▴ 60

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WGCNA wgcna package wgcna bicor

7.1 years ago bekah ▴ 40

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wgcna package

updated 7.1 years ago by Peter Langfelder ★ 3.0k • written 7.1 years ago by bekah ▴ 40

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RNA-seq WGCNA package soft power

updated 28 days ago by few.snipe.cfkf • 0 • written 7.2 years ago by modarzi ▴ 10

13 results • Page 1 of 1

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Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I'm not familiar with this usage, or code here ``` normFactors <- exp(-1 * offst(set2)) ``` In the RNA-seq gene-level workflow, we …

Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi by Michael Love 43k

> apeglm appears much more aggressive in shrinkage, pushing many genes toward logFC = 0 > ashr maintains a gradient of shrinkage val…

Comment: voomLmFit fitted log-CPM values by Gordon Smyth 53k

The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…

Comment: voomLmFit fitted log-CPM values by Lina ▴ 10

Is the output from fitted(v) in the log2 CPM scale? or CPM scale?

Answer: voomLmFit fitted log-CPM values by Gordon Smyth 53k

Fitted values are obtained from limma MArrayLM objects by ``` fitted(v) ```

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A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

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