Showing : wgcna package • reset
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problem for finding soft power for constructing network in WGCNA algorithm
RNA-seq WGCNA package soft power
written 7.2 years ago by ▴ 10
1
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0
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WGCNA trait order in heat map
wgcna WGCNA wgcna package
5.7 years ago coyoung ▴ 10
0
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3
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4.2k
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Module preservation WGCNA
wgcna wgcna package modulepreservation
written 6.8 years ago by ▴ 40
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WGCNA: Matching eigengenes to samples
wgcna wgcna package
6.8 years ago Jack • 0
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2
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1.6k
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Using Kendall's Tau rank correlation coefficient for creating WGCNA network
wgcna package wgcna
6.9 years ago anni.djurhuus • 0
2
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3
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Problem for finding "Locus Link ID" from Annotation file
wgcna package TCGA LocusLinkID genecode ensembl
updated 7.0 years ago by 68k • written 7.0 years ago by ▴ 10
0
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2
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TOMplot error: "color" is not a graphical parameter (WGCNA)
wgcna package software error
updated 7.0 years ago by ★ 3.0k • written 7.0 years ago by • 0
0
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0
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1.4k
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consensus module relationship
wgcna wgcna package consensus
7.0 years ago 2323982403 ▴ 60
2
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4
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2.0k
views
Segfault error when loading WGCNA
wgcna wgcna package
7.1 years ago antoinefelden ▴ 10
2
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2
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6.3k
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WGCNA extract genes from a module
WGCNA wgcna package
updated 7.1 years ago by ★ 3.0k • written 7.1 years ago by ▴ 10
1
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3
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1.8k
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SampleNetwork in WGCNA
wgcna wgcna package
7.2 years ago 2323982403 ▴ 60
0
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0
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3.0k
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Use of bicor in WGCNA
WGCNA wgcna package wgcna bicor
7.2 years ago bekah ▴ 40
12
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15
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23k
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WGCNA: Understanding module-trait correlations
wgcna package
updated 7.2 years ago by ★ 3.0k • written 7.2 years ago by ▴ 40
13 results • Page 1 of 1
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Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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