Bioconductor Wgcna package

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RNA-seq WGCNA package soft power

written 7.3 years ago by modarzi ▴ 10

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wgcna WGCNA wgcna package

5.8 years ago coyoung ▴ 10

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wgcna wgcna package modulepreservation

written 6.9 years ago by bekah ▴ 40

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2.5k

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wgcna wgcna package

6.9 years ago Jack • 0

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1.6k

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wgcna package wgcna

7.0 years ago anni.djurhuus • 0

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2.1k

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wgcna package TCGA LocusLinkID genecode ensembl

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by modarzi ▴ 10

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wgcna package software error

updated 7.1 years ago by Peter Langfelder ★ 3.0k • written 7.1 years ago by giuseppe0525 • 0

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wgcna wgcna package consensus

7.1 years ago 2323982403 ▴ 60

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wgcna wgcna package

7.2 years ago • updated 7.1 years ago antoinefelden ▴ 10

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6.4k

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WGCNA wgcna package

updated 7.2 years ago by Peter Langfelder ★ 3.0k • written 7.2 years ago by bdy8 ▴ 10

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1.8k

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wgcna wgcna package

7.2 years ago 2323982403 ▴ 60

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3.1k

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WGCNA wgcna package wgcna bicor

7.2 years ago bekah ▴ 40

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24k

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wgcna package

updated 7.3 years ago by Peter Langfelder ★ 3.0k • written 7.3 years ago by bekah ▴ 40

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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