Bioconductor Wgcna package

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wgcna WGCNA wgcna package

5.2 years ago coyoung ▴ 10

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wgcna wgcna package modulepreservation

written 6.3 years ago by bekah ▴ 40

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wgcna wgcna package

6.3 years ago Jack • 0

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wgcna package wgcna

6.4 years ago anni.djurhuus • 0

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wgcna package TCGA LocusLinkID genecode ensembl

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by modarzi ▴ 10

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wgcna package software error

updated 6.5 years ago by Peter Langfelder ★ 3.0k • written 6.5 years ago by giuseppe0525 • 0

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wgcna wgcna package consensus

6.5 years ago 2323982403 ▴ 60

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wgcna wgcna package

6.6 years ago • updated 6.5 years ago antoinefelden ▴ 10

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WGCNA wgcna package

updated 6.6 years ago by Peter Langfelder ★ 3.0k • written 6.6 years ago by bdy8 ▴ 10

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wgcna wgcna package

6.6 years ago 2323982403 ▴ 60

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WGCNA wgcna package wgcna bicor

6.6 years ago bekah ▴ 40

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wgcna package

updated 6.7 years ago by Peter Langfelder ★ 3.0k • written 6.7 years ago by bekah ▴ 40

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RNA-seq WGCNA package soft power

6.7 years ago modarzi ▴ 10

13 results • Page 1 of 1

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Answer: best way to grouping GSM belonging to different datasets (with different platfor by James W. MacDonald 68k

The only defensible way is to make comparisons within experiments and then do a meta-analysis. But that assumes you have identified multipl…

Comment: DESeq2 estimateSizeFactors with control genes by sofia.rigou • 0

I am also trying to use this function to estimate sizefactor based on RT-dPCR data but estimateSizeFactor only takes integers. Should I mul…

Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

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clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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