Showing : widgettools • reset
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Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 17.4 years ago by ▴ 460 • written 17.4 years ago by ▴ 70
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widgetTools
affy widgetTools affy widgetTools
updated 21.2 years ago by ▴ 40 • written 21.2 years ago by ▴ 90
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Getting LimmaGUI to run
tkWidgets widgetTools limmaGUI widgetInvoke tkWidgets widgetTools limmaGUI widgetInvoke
18.8 years ago chris umbricht ▴ 110
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install Monograph problem
Cancer widgetTools Cancer widgetTools
17.0 years ago Seth Falcon ★ 7.4k
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Recent changes to Bioconductor packages
reposTools graph widgetTools limma reposTools graph widgetTools limma
20.6 years ago • updated 20.5 years ago madman@jimmy.harvard.edu ▴ 850
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Enabling the widget option
tkWidgets affy widgetTools tkWidgets affy widgetTools
21.3 years ago Tapan Mehta ▴ 270
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Can't install tcl/tk on Mac OS 10.3.7
widgetTools widgetTools
updated 19.3 years ago by ▴ 430 • written 19.3 years ago by ▴ 10
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12
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1.9k
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Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 460
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2
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ReadAffy widget fails for Annotated DataFrame
Microarray DynDoc tkWidgets affy widgetTools Microarray DynDoc tkWidgets affy widgetTools
updated 16.6 years ago by 25k • written 16.6 years ago by ▴ 140
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851
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Installation failed
reposTools widgetTools reposTools widgetTools
updated 21.2 years ago by ★ 3.9k • written 21.2 years ago by ▴ 30
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2
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Problems Getting Started
cdf widgetTools cdf widgetTools
updated 21.1 years ago by ★ 1.1k • written 21.1 years ago by ▴ 340
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1
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869
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ReadAffy error
widgetTools widgetTools
updated 20.9 years ago by ★ 2.3k • written 20.9 years ago by ★ 1.4k
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913
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ReadAffy question
GO Ruuid DynDoc annotate genefilter multtest tkWidgets reposTools affy widgetTools limma
updated 18.3 years ago by 65k • written 18.3 years ago by ▴ 890
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widgetTools wFuns problem
DynDoc tkWidgets reposTools widgetTools DynDoc tkWidgets reposTools widgetTools
updated 18.3 years ago by ★ 2.9k • written 18.3 years ago by ▴ 80
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725
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error running the example of the widget function in the widgetTools library
widgetTools widgetTools
updated 18.0 years ago by ★ 7.4k • written 18.0 years ago by ▴ 80
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1
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1.1k
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paired design, LIMMA
cdf tkWidgets affy widgetTools limma affyio cdf tkWidgets affy widgetTools limma affyio
updated 17.0 years ago by ▴ 470 • written 17.0 years ago by 50k
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1.2k
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tcl/tk and biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 30
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1
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1.3k
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Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Cancer tkWidgets widgetTools Cancer tkWidgets widgetTools
updated 17.6 years ago by ▴ 150 • written 17.7 years ago by ★ 2.9k
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error running the example of the widget function in the widgetTools library
widgetTools widgetTools
18.0 years ago Hervé Pagès 16k
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777
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Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
widgetTools widgetTools
17.7 years ago John E. Cornell, Ph.D. ▴ 150
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964
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problems reading Illumina files using BeadExplorer
affy widgetTools limma marray convert affyio BeadExplorer affy widgetTools limma marray
17.5 years ago Vitalina Komashko ▴ 10
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837
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update.packages
widgetTools widgetTools
20.8 years ago Justin Borevitz ▴ 90
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698
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Error in loading bioconductor packages in Rterm and ESS+XEmacs modes
GUI widgetTools GUI widgetTools
21.1 years ago Dr Mushtaq Ahmed ▴ 20
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960
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Memory issues with limma and ImaGen file import
widgetTools limma widgetTools limma
17.3 years ago CV Markus ▴ 10
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1.0k
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batch vs interactive behavior of reposTools()
Biobase DynDoc tkWidgets widgetTools Biobase DynDoc tkWidgets widgetTools
19.4 years ago Marion Hakanson ▴ 50
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Tcl install
genefilter widgetTools genefilter widgetTools
19.5 years ago Matt McCall ▴ 50
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1.1k
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Re: Annotate clones Bioconductor beginner
Microarray Annotation GUI annotate widgetTools AnnBuilder Microarray Annotation GUI
20.4 years ago John Zhang ★ 2.9k
0
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tcl/tk dependency of biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
17.0 years ago grischa tödt ▴ 30
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marray and limma error with lmFit
Microarray Biobase DynDoc widgetTools limma arrayQuality marray convert Microarray DynDoc
17.1 years ago Paquet, Agnes ▴ 500
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Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
16.9 years ago Seth Falcon ★ 7.4k
30 results • Page 1 of 1
Recent ...
Replies
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square? by Gordon Smyth 50k
The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …
Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Votes
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
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