Showing : xps • reset
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XPS: Arabidopsis Gene 1.0 ST Array, import.exon.scheme ERROR
Annotation xps Annotation xps
updated 12.8 years ago by ★ 3.9k • written 12.8 years ago by ★ 13k
0
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2
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1.9k
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xps installation question
xps xps
updated 12.9 years ago by ★ 3.9k • written 12.9 years ago by ▴ 450
0
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4
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1.7k
views
xps: hugene11 chip gives problems
Microarray Annotation xps Microarray Annotation xps
updated 12.9 years ago by ★ 3.9k • written 12.9 years ago by ▴ 630
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1
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1.1k
views
Custom CDF for alternative splicing with xps
Annotation cdf xps Annotation cdf xps
updated 13.0 years ago by ★ 3.9k • written 13.0 years ago by ★ 13k
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945
views
xps error
xps xps
13.2 years ago cstrato ★ 3.9k
0
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3
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1.6k
views
xps problem with root files
Microarray xps Microarray xps
updated 13.2 years ago by ★ 3.9k • written 13.2 years ago by ▴ 190
0
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1
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1.2k
views
Difference in DABG between XPS package and APT
xps xps
updated 13.3 years ago by ★ 3.9k • written 13.3 years ago by ★ 13k
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3
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1.7k
views
package xps: export.filter issues
Annotation probe xps Annotation probe xps
updated 13.3 years ago by ★ 3.9k • written 13.3 years ago by ▴ 90
0
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0
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822
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package xps and affy hugene 2.1 st
xps xps
13.3 years ago cstrato ★ 3.9k
0
votes
10
replies
2.7k
views
package xps
xps xps
updated 13.4 years ago by ★ 8.2k • written 13.4 years ago by ▴ 110
0
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1
reply
1.2k
views
Error fom XPS installation
xps xps
updated 13.4 years ago by ★ 3.9k • written 13.4 years ago by ▴ 10
0
votes
1
reply
1.3k
views
xps scheme building
Annotation PROcess xps Annotation PROcess xps
updated 13.5 years ago by ★ 3.9k • written 13.5 years ago by ▴ 930
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0
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975
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XPS package working with Affymetrix GeneChip 1.0 ST at gene level
cdf affy plier xps cdf affy plier xps
13.5 years ago cstrato ★ 3.9k
0
votes
3
replies
1.4k
views
XPS package working with Affymetrix GeneChip 1.0 ST at gene level
cdf affy xps cdf affy xps
updated 13.5 years ago by ★ 3.9k • written 13.5 years ago by ★ 13k
0
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3
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1.6k
views
question about how analysis affymetrix huex st array
limma xps limma xps
updated 13.6 years ago by ★ 3.9k • written 13.6 years ago by ★ 1.3k
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13
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2.8k
views
Loading quantiles normalized root data in XPS
probe affy xps probe affy xps
updated 13.9 years ago by ★ 3.9k • written 13.9 years ago by ★ 1.3k
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votes
1
reply
875
views
[XPS] Background computation on single CEL file
PROcess xps PROcess xps
updated 13.9 years ago by ★ 3.9k • written 13.9 years ago by ▴ 50
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1
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2.8k
views
Hu Gene 1.0 ST v1 microarray processing and analysis
Microarray Annotation PROcess xps Microarray Annotation PROcess xps
updated 13.9 years ago by 68k • written 13.9 years ago by ▴ 10
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Bioconductor Digest, Vol 106, Issue 21
SNP Microarray VariantAnnotation Annotation cdf probe affy limma PROcess oligo xps SNP
14.0 years ago Jing Huang ▴ 380
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946
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Erros in crlmm Re: SNP 6 chip
SNP Sequencing affy oligo xps crlmm SNP Sequencing affy oligo xps crlmm
14.2 years ago Benilton Carvalho ★ 4.3k
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1
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1.3k
views
Easy way to map Exon array probes to coordinates?
Cancer exonmap xps Cancer exonmap xps
updated 14.2 years ago by ★ 3.9k • written 14.2 years ago by ▴ 260
0
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4
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1.5k
views
[XPS] integrating data processed outside of XPS into the tree
PROcess xps frma PROcess xps frma
updated 14.2 years ago by ★ 3.9k • written 14.2 years ago by ▴ 50
0
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1
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1.2k
views
[XPS] detection call using MAS5 and DABG
xps xps
updated 14.3 years ago by ★ 3.9k • written 14.3 years ago by ▴ 50
0
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0
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1.8k
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I: R: R: R: Probe-level analysis of exon arrays using xps
Annotation Normalization Preprocessing Breast Prostate probe GLAD Category xps Annotation
14.3 years ago Lavorgna Giovanni ▴ 80
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4
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2.1k
views
R: R: Probe-level analysis of exon arrays using xps
Annotation Normalization Breast Prostate probe Category xps Annotation Normalization xps
updated 14.3 years ago by ★ 3.9k • written 14.3 years ago by ▴ 80
0
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1
reply
1.1k
views
xps: root scheme annotations
Annotation xps Annotation xps
updated 14.3 years ago by ★ 3.9k • written 14.3 years ago by ▴ 30
0
votes
4
replies
1.4k
views
Probe-level analysis of exon arrays using xps
probe xps probe xps
updated 14.3 years ago by ★ 3.9k • written 14.3 years ago by ▴ 80
0
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2
replies
1.7k
views
Affymetrix Gene Chip Normalization
Normalization affy oligo xps Normalization affy oligo xps
updated 14.5 years ago by ★ 3.9k • written 14.5 years ago by ▴ 30
0
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3
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1.7k
views
XPS crashes
PROcess xps PROcess xps
14.5 years ago Clara Pons ▴ 30
0
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1
reply
1.2k
views
R crash when using xps package
xps xps
updated 14.6 years ago by ★ 3.9k • written 14.6 years ago by ▴ 10
0
votes
0
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1.2k
views
XPS: new quality control features (e.g. residual images)
xps xps
14.7 years ago cstrato ★ 3.9k
0
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1
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1.5k
views
working with ROOT and the xps problem
miRNA Microarray Annotation Homo sapiens probe xps miRNA Microarray Annotation probe xps
updated 14.7 years ago by ★ 3.9k • written 14.7 years ago by ★ 1.5k
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3
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1.5k
views
RMA in Bioconductor versus APT - missing probesets
probe xps probe xps
updated 14.8 years ago by ▴ 320 • written 14.8 years ago by ▴ 910
0
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1
reply
1.1k
views
error in import.exon.scheme (XPS package)
xps xps
updated 14.8 years ago by ★ 3.9k • written 14.8 years ago by ▴ 180
0
votes
1
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911
views
RMA in xps does not use HuEx-1_0-st-v2.r2.antigenomic.bgp file. Possible ERROR?
xps xps
updated 14.9 years ago by ★ 3.9k • written 14.9 years ago by ▴ 30
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0
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1.8k
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PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
15.0 years ago Roman ▴ 20
0
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1
reply
770
views
xps package where is mask for exon arrays explained
xps xps
updated 15.0 years ago by ★ 3.9k • written 15.0 years ago by ▴ 170
0
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2
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2.0k
views
FW: PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
updated 15.0 years ago by ▴ 120 • written 15.0 years ago by ▴ 10
0
votes
2
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2.2k
views
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
updated 15.0 years ago by ★ 4.3k • written 15.0 years ago by ▴ 120
0
votes
3
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1.4k
views
Package xps - Problem accessing README file
safe xps safe xps
updated 15.1 years ago by ★ 3.9k • written 15.1 years ago by ★ 8.2k
0
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2
replies
1.3k
views
"import.expr.scheme" error in Package "xps"
Annotation cdf probe xps Annotation cdf probe xps
updated 15.1 years ago by ★ 3.9k • written 15.1 years ago by ▴ 20
0
votes
1
reply
925
views
function "uniqueframe"
xps xps
updated 15.1 years ago by ▴ 80 • written 15.1 years ago by ★ 3.9k
0
votes
3
replies
1.5k
views
filter on Human Gene U133 Plus 2
Microarray probe xps Microarray probe xps
updated 15.1 years ago by ▴ 80 • written 15.1 years ago by ▴ 240
0
votes
2
replies
1.5k
views
filter on Human Gene U133 Plus 2
Microarray xps Microarray xps
updated 15.1 years ago by ★ 3.9k • written 15.1 years ago by ▴ 80
0
votes
1
reply
1.2k
views
Package xps: problem with RMA normalization for Human Gene ST 1.0
Annotation Normalization xps Annotation Normalization xps
updated 15.1 years ago by ▴ 80 • written 15.1 years ago by ★ 3.9k
0
votes
0
replies
1.1k
views
Package xps: problem with RMA normalization for Human Gene ST 1.0
Normalization xps Normalization xps
15.1 years ago Naïma Oumouhou ▴ 80
0
votes
3
replies
1.4k
views
RMA XPS Problem on MoGene 1.0 ST
Preprocessing Cancer xps Preprocessing Cancer xps
updated 15.2 years ago by ★ 3.9k • written 15.2 years ago by ▴ 20
1
vote
4
replies
4.4k
views
Detection Above Background (DABG) on Gene Level for Exon and Gene Arrays
probe xps probe xps
updated 15.2 years ago by ★ 3.9k • written 15.2 years ago by ▴ 80
0
votes
1
reply
1.3k
views
Quality control on Human Affymetrix Exon microarrays
affyPLM xps affyPLM xps
updated 15.3 years ago by ★ 3.9k • written 15.3 years ago by ▴ 120
0
votes
8
replies
1.9k
views
Can't normalize 300+ HuGene arrays in xps
xps xps
updated 15.3 years ago by ★ 3.9k • written 15.3 years ago by ▴ 230
150 results • Page 2 of 3
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Normalizing complex datasets like Hi C can be challenging, much like setting up a PC for optimal gaming performance. Just as careful tuning…
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Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
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In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
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Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
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Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
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