Showing : xps • reset
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1.2k
views
XPS: Arabidopsis Gene 1.0 ST Array, import.exon.scheme ERROR
Annotation xps Annotation xps
updated 12.6 years ago by ★ 3.9k • written 12.6 years ago by ★ 13k
0
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2
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1.9k
views
xps installation question
xps xps
updated 12.7 years ago by ★ 3.9k • written 12.7 years ago by ▴ 450
0
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4
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1.6k
views
xps: hugene11 chip gives problems
Microarray Annotation xps Microarray Annotation xps
updated 12.7 years ago by ★ 3.9k • written 12.7 years ago by ▴ 630
0
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1
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1.0k
views
Custom CDF for alternative splicing with xps
Annotation cdf xps Annotation cdf xps
updated 12.8 years ago by ★ 3.9k • written 12.8 years ago by ★ 13k
0
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0
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923
views
xps error
xps xps
13.0 years ago cstrato ★ 3.9k
0
votes
3
replies
1.6k
views
xps problem with root files
Microarray xps Microarray xps
updated 13.0 years ago by ★ 3.9k • written 13.0 years ago by ▴ 190
0
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1
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1.1k
views
Difference in DABG between XPS package and APT
xps xps
updated 13.1 years ago by ★ 3.9k • written 13.1 years ago by ★ 13k
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votes
3
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1.6k
views
package xps: export.filter issues
Annotation probe xps Annotation probe xps
updated 13.1 years ago by ★ 3.9k • written 13.2 years ago by ▴ 90
0
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0
replies
790
views
package xps and affy hugene 2.1 st
xps xps
13.1 years ago cstrato ★ 3.9k
0
votes
10
replies
2.6k
views
package xps
xps xps
updated 13.2 years ago by ★ 8.2k • written 13.2 years ago by ▴ 110
0
votes
1
reply
1.2k
views
Error fom XPS installation
xps xps
updated 13.3 years ago by ★ 3.9k • written 13.3 years ago by ▴ 10
0
votes
1
reply
1.3k
views
xps scheme building
Annotation PROcess xps Annotation PROcess xps
updated 13.3 years ago by ★ 3.9k • written 13.3 years ago by ▴ 930
0
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0
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948
views
XPS package working with Affymetrix GeneChip 1.0 ST at gene level
cdf affy plier xps cdf affy plier xps
13.4 years ago cstrato ★ 3.9k
0
votes
3
replies
1.3k
views
XPS package working with Affymetrix GeneChip 1.0 ST at gene level
cdf affy xps cdf affy xps
updated 13.4 years ago by ★ 3.9k • written 13.4 years ago by ★ 13k
0
votes
3
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1.5k
views
question about how analysis affymetrix huex st array
limma xps limma xps
updated 13.4 years ago by ★ 3.9k • written 13.4 years ago by ★ 1.3k
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votes
13
replies
2.6k
views
Loading quantiles normalized root data in XPS
probe affy xps probe affy xps
updated 13.7 years ago by ★ 3.9k • written 13.7 years ago by ★ 1.3k
0
votes
1
reply
841
views
[XPS] Background computation on single CEL file
PROcess xps PROcess xps
updated 13.7 years ago by ★ 3.9k • written 13.7 years ago by ▴ 50
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1
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2.7k
views
Hu Gene 1.0 ST v1 microarray processing and analysis
Microarray Annotation PROcess xps Microarray Annotation PROcess xps
updated 13.8 years ago by 68k • written 13.8 years ago by ▴ 10
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0
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1.2k
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Bioconductor Digest, Vol 106, Issue 21
SNP Microarray VariantAnnotation Annotation cdf probe affy limma PROcess oligo xps SNP
13.8 years ago Jing Huang ▴ 380
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924
views
Erros in crlmm Re: SNP 6 chip
SNP Sequencing affy oligo xps crlmm SNP Sequencing affy oligo xps crlmm
14.0 years ago Benilton Carvalho ★ 4.3k
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1
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1.2k
views
Easy way to map Exon array probes to coordinates?
Cancer exonmap xps Cancer exonmap xps
updated 14.0 years ago by ★ 3.9k • written 14.0 years ago by ▴ 260
0
votes
4
replies
1.4k
views
[XPS] integrating data processed outside of XPS into the tree
PROcess xps frma PROcess xps frma
updated 14.0 years ago by ★ 3.9k • written 14.0 years ago by ▴ 50
0
votes
1
reply
1.1k
views
[XPS] detection call using MAS5 and DABG
xps xps
updated 14.1 years ago by ★ 3.9k • written 14.1 years ago by ▴ 50
0
votes
0
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1.7k
views
I: R: R: R: Probe-level analysis of exon arrays using xps
Annotation Normalization Preprocessing Breast Prostate probe GLAD Category xps Annotation
14.1 years ago Lavorgna Giovanni ▴ 80
0
votes
4
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2.0k
views
R: R: Probe-level analysis of exon arrays using xps
Annotation Normalization Breast Prostate probe Category xps Annotation Normalization xps
updated 14.1 years ago by ★ 3.9k • written 14.1 years ago by ▴ 80
0
votes
1
reply
1.1k
views
xps: root scheme annotations
Annotation xps Annotation xps
updated 14.1 years ago by ★ 3.9k • written 14.1 years ago by ▴ 30
0
votes
4
replies
1.3k
views
Probe-level analysis of exon arrays using xps
probe xps probe xps
updated 14.1 years ago by ★ 3.9k • written 14.1 years ago by ▴ 80
0
votes
2
replies
1.6k
views
Affymetrix Gene Chip Normalization
Normalization affy oligo xps Normalization affy oligo xps
updated 14.3 years ago by ★ 3.9k • written 14.3 years ago by ▴ 30
0
votes
3
replies
1.6k
views
XPS crashes
PROcess xps PROcess xps
14.4 years ago Clara Pons ▴ 30
0
votes
1
reply
1.1k
views
R crash when using xps package
xps xps
updated 14.4 years ago by ★ 3.9k • written 14.4 years ago by ▴ 10
0
votes
0
replies
1.2k
views
XPS: new quality control features (e.g. residual images)
xps xps
14.5 years ago cstrato ★ 3.9k
0
votes
1
reply
1.4k
views
working with ROOT and the xps problem
miRNA Microarray Annotation Homo sapiens probe xps miRNA Microarray Annotation probe xps
updated 14.6 years ago by ★ 3.9k • written 14.6 years ago by ★ 1.5k
0
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3
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1.4k
views
RMA in Bioconductor versus APT - missing probesets
probe xps probe xps
updated 14.6 years ago by ▴ 320 • written 14.6 years ago by ▴ 910
0
votes
1
reply
1.1k
views
error in import.exon.scheme (XPS package)
xps xps
updated 14.7 years ago by ★ 3.9k • written 14.7 years ago by ▴ 180
0
votes
1
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876
views
RMA in xps does not use HuEx-1_0-st-v2.r2.antigenomic.bgp file. Possible ERROR?
xps xps
updated 14.7 years ago by ★ 3.9k • written 14.7 years ago by ▴ 30
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0
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1.8k
views
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
14.8 years ago Roman ▴ 20
0
votes
1
reply
728
views
xps package where is mask for exon arrays explained
xps xps
updated 14.8 years ago by ★ 3.9k • written 14.8 years ago by ▴ 170
0
votes
2
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2.0k
views
FW: PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
updated 14.8 years ago by ▴ 120 • written 14.8 years ago by ▴ 10
0
votes
2
replies
2.1k
views
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
updated 14.8 years ago by ★ 4.3k • written 14.8 years ago by ▴ 120
0
votes
3
replies
1.4k
views
Package xps - Problem accessing README file
safe xps safe xps
updated 14.9 years ago by ★ 3.9k • written 14.9 years ago by ★ 8.2k
0
votes
2
replies
1.2k
views
"import.expr.scheme" error in Package "xps"
Annotation cdf probe xps Annotation cdf probe xps
updated 14.9 years ago by ★ 3.9k • written 14.9 years ago by ▴ 20
0
votes
1
reply
892
views
function "uniqueframe"
xps xps
updated 14.9 years ago by ▴ 80 • written 14.9 years ago by ★ 3.9k
0
votes
3
replies
1.5k
views
filter on Human Gene U133 Plus 2
Microarray probe xps Microarray probe xps
updated 14.9 years ago by ▴ 80 • written 14.9 years ago by ▴ 240
0
votes
2
replies
1.5k
views
filter on Human Gene U133 Plus 2
Microarray xps Microarray xps
updated 15.0 years ago by ★ 3.9k • written 15.0 years ago by ▴ 80
0
votes
1
reply
1.2k
views
Package xps: problem with RMA normalization for Human Gene ST 1.0
Annotation Normalization xps Annotation Normalization xps
updated 15.0 years ago by ▴ 80 • written 15.0 years ago by ★ 3.9k
0
votes
0
replies
1.1k
views
Package xps: problem with RMA normalization for Human Gene ST 1.0
Normalization xps Normalization xps
15.0 years ago Naïma Oumouhou ▴ 80
0
votes
3
replies
1.4k
views
RMA XPS Problem on MoGene 1.0 ST
Preprocessing Cancer xps Preprocessing Cancer xps
updated 15.0 years ago by ★ 3.9k • written 15.0 years ago by ▴ 20
1
vote
4
replies
4.3k
views
Detection Above Background (DABG) on Gene Level for Exon and Gene Arrays
probe xps probe xps
updated 15.1 years ago by ★ 3.9k • written 15.1 years ago by ▴ 80
0
votes
1
reply
1.2k
views
Quality control on Human Affymetrix Exon microarrays
affyPLM xps affyPLM xps
updated 15.1 years ago by ★ 3.9k • written 15.1 years ago by ▴ 120
0
votes
8
replies
1.8k
views
Can't normalize 300+ HuGene arrays in xps
xps xps
updated 15.1 years ago by ★ 3.9k • written 15.1 years ago by ▴ 230
150 results • Page 2 of 3
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Comment: Results with PON give more variants by ejafgdf4.ge.r.m • 0
It s common to expect Mutect2 with a PON to be a strict subset of Mutect2 without it but seeing unique variants in Mutect2withPON isn t unu…
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Comment: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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