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2
votes
2
replies
2.3k
views
Filtering GFF3 file
annotation gff3 gff genome
updated 5.3 years ago by ★ 11k • written 5.3 years ago by ▴ 10
1
vote
1
reply
778
views
Visualizing Orthologs and Paralogs genes
Orthologs Paralogs porthomcl circos visualizing
updated 5.6 years ago by 67k • written 5.6 years ago by ▴ 10
0
votes
0
replies
1.0k
views
genetic and linkage maps construction
genetic map linkage maps SNP assembly GBS
5.9 years ago mictadlo ▴ 10
0
votes
0
replies
1.4k
views
vcf to venn diagram
snps vcf venn diagram ggplot2
6.0 years ago mictadlo ▴ 10
0
votes
1
reply
1.8k
views
Comment: C: from denove contig assembly to chromosome bins
6.0 years ago mictadlo ▴ 10
0
votes
1
reply
1.8k
views
Comment: C: from denove contig assembly to chromosome bins
6.0 years ago mictadlo ▴ 10
0
votes
1
reply
1.8k
views
Comment: C: from denove contig assembly to chromosome bins
6.0 years ago mictadlo ▴ 10
0
votes
1
reply
1.8k
views
Comment: C: from denove contig assembly to chromosome bins
6.0 years ago mictadlo ▴ 10
0
votes
9
replies
1.8k
views
from denove contig assembly to chromosome bins
diffhic gothic hicup hic-c hic
updated 6.0 years ago by ★ 28k • written 6.0 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic diffhic gothic hicup hic-c
6.0 years ago mictadlo ▴ 10
0
votes
1
reply
1.0k
views
plot get overridden rather to overlapped
rsamtools ggplot2 plot
updated 6.0 years ago by 67k • written 6.0 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Answer: C: Error in scanBam(bam_fn) : could not find function "scanBam"
6.0 years ago mictadlo ▴ 10
0
votes
1
reply
1.3k
views
Answer: A: gene names disapper from heatmap.2 after adding gene descripton
7.2 years ago mictadlo ▴ 10
0
votes
2
replies
1.3k
views
gene names disapper from heatmap.2 after adding gene descripton
heatmap.2 edger
7.2 years ago mictadlo ▴ 10
0
votes
0
replies
5.1k
views
Comment: C: Error in plot.new() : figure margins too large
7.2 years ago mictadlo ▴ 10
4
votes
4
replies
5.1k
views
Error in plot.new() : figure margins too large
edger
updated 7.2 years ago by 52k • written 7.2 years ago by ▴ 10
0
votes
1
reply
3.9k
views
Comment: C: saving a plot as png and also showing inside Rstudio
7.2 years ago mictadlo ▴ 10
3
votes
4
replies
3.9k
views
saving a plot as png and also showing inside Rstudio
edger ggplot2
updated 7.2 years ago by ★ 28k • written 7.2 years ago by ▴ 10
7
votes
2
replies
6.9k
views
How is it possible to get a legend outside plotMDS?
edger ggplot2
updated 7.2 years ago by 67k • written 7.2 years ago by ▴ 10
2
votes
1
reply
1.4k
views
How to filter glmTreat results by a false discovery rate (FDR) of 0.05
edger
updated 7.2 years ago by ★ 28k • written 7.2 years ago by ▴ 10
0
votes
1
reply
1.0k
views
Comment: C: adding a description column to glmTreat output
7.2 years ago mictadlo ▴ 10
0
votes
1
reply
23k
views
Error in .External.graphics(C_layout, num.rows, num.cols, mat, as.integer(num.figures)
edger ggplot
updated 7.2 years ago by ★ 28k • written 7.2 years ago by ▴ 10
2
votes
3
replies
1.0k
views
adding a description column to glmTreat output
edger
updated 7.2 years ago by ★ 28k • written 7.2 years ago by ▴ 10
0
votes
0
replies
2.3k
views
Comment: C: How to produce png files from printGraph
7.2 years ago mictadlo ▴ 10
0
votes
1
reply
2.3k
views
Comment: C: How to produce png files from printGraph
7.2 years ago mictadlo ▴ 10
0
votes
0
replies
2.3k
views
Comment: C: How to produce png files from printGraph
7.2 years ago mictadlo ▴ 10
0
votes
0
replies
2.3k
views
Comment: C: How to produce png files from printGraph
7.2 years ago mictadlo ▴ 10
0
votes
8
replies
2.3k
views
How to produce png files from printGraph
topgo
updated 7.2 years ago by ▴ 10 • written 7.2 years ago by ▴ 10
2
votes
1
reply
2.0k
views
Error in plot.new() : figure margins too large
edger ggplot
updated 7.2 years ago by 52k • written 7.2 years ago by ▴ 10
2
votes
1
reply
837
views
Error in `rownames<-`(`*tmp*`, value = list(genes
edger
updated 7.2 years ago by ★ 28k • written 7.2 years ago by ▴ 10
0
votes
1
reply
3.1k
views
Error in xy.coords(x, y, xlabel, ylabel, log)
topgo svg
7.2 years ago mictadlo ▴ 10
0
votes
0
replies
3.1k
views
Answer: A: Error in xy.coords(x, y, xlabel, ylabel, log)
7.2 years ago mictadlo ▴ 10
3
votes
1
reply
2.2k
views
column nubering plotMDS
edger plotmds
updated 7.2 years ago by ★ 28k • written 7.2 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Synteny plots with OmicCircos or Rcircos
omiccircos rcircos
7.2 years ago mictadlo ▴ 10
0
votes
1
reply
2.8k
views
Comment: C: topGO - missing value where TRUE/FALSE needed
7.3 years ago mictadlo ▴ 10
0
votes
3
replies
2.8k
views
topGO - missing value where TRUE/FALSE needed
topgo edger
7.3 years ago mictadlo ▴ 10
0
votes
1
reply
1.1k
views
Comment: C: Saving output from glmTreat to a csv file?
7.3 years ago mictadlo ▴ 10
3
votes
3
replies
1.1k
views
Saving output from glmTreat to a csv file?
edger rna-seq
updated 7.3 years ago by ★ 28k • written 7.3 years ago by ▴ 10
0
votes
0
replies
1.8k
views
Comment: C: bias.data vector must have the same length as DEgenes vector!
7.3 years ago mictadlo ▴ 10
0
votes
2
replies
1.8k
views
bias.data vector must have the same length as DEgenes vector!
edger goseq
updated 7.3 years ago by ★ 28k • written 7.3 years ago by ▴ 10
3
votes
1
reply
585
views
adding genes to edgeR
edger
updated 7.3 years ago by ★ 28k • written 7.3 years ago by ▴ 10
0
votes
0
replies
1.5k
views
gene length file for GOseq
goseq
7.3 years ago mictadlo ▴ 10
0
votes
0
replies
1.7k
views
Comment: C: Error in normSplitFactor(f, x)
7.3 years ago mictadlo ▴ 10
2
votes
2
replies
1.7k
views
Error in normSplitFactor(f, x)
GenomicRanges rtracklayer goseq
updated 7.3 years ago by ★ 11k • written 7.3 years ago by ▴ 10
0
votes
1
reply
1.7k
views
Comment: C: goseq after edgeR
7.3 years ago mictadlo ▴ 10
0
votes
3
replies
1.7k
views
goseq after edgeR
edger goseq
updated 7.3 years ago by ★ 28k • written 7.3 years ago by ▴ 10
0
votes
0
replies
1.4k
views
Comment: C: how to build gene.pathway data.frame for non-model organism
7.3 years ago mictadlo ▴ 10
0
votes
0
replies
3.0k
views
Comment: C: How to use topGO and KEGG with de-novo species
7.3 years ago mictadlo ▴ 10
0
votes
2
replies
1.4k
views
how to build gene.pathway data.frame for non-model organism
limma kegg topgo dataframe edger
7.3 years ago mictadlo ▴ 10
0
votes
1
reply
3.0k
views
Comment: C: How to use topGO and KEGG with de-novo species
7.3 years ago mictadlo ▴ 10
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