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2
votes
2
replies
1.9k
views
Filtering GFF3 file
annotation gff3 gff genome
updated 4.7 years ago by ★ 11k • written 4.7 years ago by ▴ 10
1
vote
1
reply
644
views
Visualizing Orthologs and Paralogs genes
Orthologs Paralogs porthomcl circos visualizing
updated 5.0 years ago by 65k • written 5.0 years ago by ▴ 10
0
votes
0
replies
816
views
genetic and linkage maps construction
genetic map linkage maps SNP assembly GBS
5.3 years ago mictadlo ▴ 10
0
votes
0
replies
1.2k
views
vcf to venn diagram
snps vcf venn diagram ggplot2
5.4 years ago mictadlo ▴ 10
0
votes
1
reply
1.5k
views
Comment: C: from denove contig assembly to chromosome bins
5.4 years ago mictadlo ▴ 10
0
votes
1
reply
1.5k
views
Comment: C: from denove contig assembly to chromosome bins
5.4 years ago mictadlo ▴ 10
0
votes
1
reply
1.5k
views
Comment: C: from denove contig assembly to chromosome bins
5.4 years ago mictadlo ▴ 10
0
votes
1
reply
1.5k
views
Comment: C: from denove contig assembly to chromosome bins
5.4 years ago mictadlo ▴ 10
0
votes
9
replies
1.5k
views
from denove contig assembly to chromosome bins
diffhic gothic hicup hic-c hic
updated 5.4 years ago by ★ 28k • written 5.4 years ago by ▴ 10
0
votes
1
reply
906
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic diffhic gothic hicup hic-c
5.4 years ago mictadlo ▴ 10
0
votes
1
reply
865
views
plot get overridden rather to overlapped
rsamtools ggplot2 plot
updated 5.4 years ago by 65k • written 5.4 years ago by ▴ 10
0
votes
0
replies
906
views
Answer: C: Error in scanBam(bam_fn) : could not find function "scanBam"
5.4 years ago mictadlo ▴ 10
0
votes
1
reply
1.2k
views
Answer: A: gene names disapper from heatmap.2 after adding gene descripton
6.6 years ago mictadlo ▴ 10
0
votes
2
replies
1.2k
views
gene names disapper from heatmap.2 after adding gene descripton
heatmap.2 edger
6.6 years ago mictadlo ▴ 10
0
votes
0
replies
4.6k
views
Comment: C: Error in plot.new() : figure margins too large
6.6 years ago mictadlo ▴ 10
4
votes
4
replies
4.6k
views
Error in plot.new() : figure margins too large
edger
updated 6.6 years ago by 50k • written 6.6 years ago by ▴ 10
0
votes
1
reply
3.4k
views
Comment: C: saving a plot as png and also showing inside Rstudio
6.6 years ago mictadlo ▴ 10
3
votes
4
replies
3.4k
views
saving a plot as png and also showing inside Rstudio
edger ggplot2
updated 6.6 years ago by ★ 28k • written 6.6 years ago by ▴ 10
6
votes
2
replies
6.3k
views
How is it possible to get a legend outside plotMDS?
edger ggplot2
updated 6.6 years ago by 65k • written 6.6 years ago by ▴ 10
2
votes
1
reply
1.3k
views
How to filter glmTreat results by a false discovery rate (FDR) of 0.05
edger
updated 6.6 years ago by ★ 28k • written 6.6 years ago by ▴ 10
0
votes
1
reply
884
views
Comment: C: adding a description column to glmTreat output
6.6 years ago mictadlo ▴ 10
0
votes
1
reply
21k
views
Error in .External.graphics(C_layout, num.rows, num.cols, mat, as.integer(num.figures)
edger ggplot
updated 6.6 years ago by ★ 28k • written 6.6 years ago by ▴ 10
2
votes
3
replies
884
views
adding a description column to glmTreat output
edger
updated 6.6 years ago by ★ 28k • written 6.6 years ago by ▴ 10
0
votes
0
replies
2.0k
views
Comment: C: How to produce png files from printGraph
6.6 years ago mictadlo ▴ 10
0
votes
1
reply
2.0k
views
Comment: C: How to produce png files from printGraph
6.6 years ago mictadlo ▴ 10
0
votes
0
replies
2.0k
views
Comment: C: How to produce png files from printGraph
6.6 years ago mictadlo ▴ 10
0
votes
0
replies
2.0k
views
Comment: C: How to produce png files from printGraph
6.6 years ago mictadlo ▴ 10
0
votes
8
replies
2.0k
views
How to produce png files from printGraph
topgo
updated 6.6 years ago by ▴ 10 • written 6.6 years ago by ▴ 10
2
votes
1
reply
1.8k
views
Error in plot.new() : figure margins too large
edger ggplot
updated 6.6 years ago by 50k • written 6.6 years ago by ▴ 10
2
votes
1
reply
667
views
Error in `rownames<-`(`*tmp*`, value = list(genes
edger
updated 6.6 years ago by ★ 28k • written 6.6 years ago by ▴ 10
0
votes
0
replies
2.9k
views
Answer: A: Error in xy.coords(x, y, xlabel, ylabel, log)
6.6 years ago mictadlo ▴ 10
0
votes
1
reply
2.9k
views
Error in xy.coords(x, y, xlabel, ylabel, log)
topgo svg
6.6 years ago mictadlo ▴ 10
3
votes
1
reply
2.0k
views
column nubering plotMDS
edger plotmds
updated 6.6 years ago by ★ 28k • written 6.6 years ago by ▴ 10
0
votes
0
replies
916
views
Synteny plots with OmicCircos or Rcircos
omiccircos rcircos
6.6 years ago mictadlo ▴ 10
0
votes
1
reply
2.6k
views
Comment: C: topGO - missing value where TRUE/FALSE needed
6.6 years ago mictadlo ▴ 10
0
votes
3
replies
2.6k
views
topGO - missing value where TRUE/FALSE needed
topgo edger
6.6 years ago mictadlo ▴ 10
0
votes
1
reply
956
views
Comment: C: Saving output from glmTreat to a csv file?
6.6 years ago mictadlo ▴ 10
3
votes
3
replies
956
views
Saving output from glmTreat to a csv file?
edger rna-seq
updated 6.6 years ago by ★ 28k • written 6.6 years ago by ▴ 10
0
votes
0
replies
1.6k
views
Comment: C: bias.data vector must have the same length as DEgenes vector!
6.6 years ago mictadlo ▴ 10
0
votes
2
replies
1.6k
views
bias.data vector must have the same length as DEgenes vector!
edger goseq
updated 6.6 years ago by ★ 28k • written 6.6 years ago by ▴ 10
3
votes
1
reply
501
views
adding genes to edgeR
edger
updated 6.6 years ago by ★ 28k • written 6.6 years ago by ▴ 10
0
votes
0
replies
1.2k
views
gene length file for GOseq
goseq
6.6 years ago mictadlo ▴ 10
0
votes
0
replies
1.4k
views
Comment: C: Error in normSplitFactor(f, x)
6.6 years ago mictadlo ▴ 10
2
votes
2
replies
1.4k
views
Error in normSplitFactor(f, x)
GenomicRanges rtracklayer goseq
updated 6.6 years ago by ★ 11k • written 6.6 years ago by ▴ 10
0
votes
1
reply
1.5k
views
Comment: C: goseq after edgeR
6.6 years ago mictadlo ▴ 10
0
votes
3
replies
1.5k
views
goseq after edgeR
edger goseq
updated 6.6 years ago by ★ 28k • written 6.6 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Comment: C: how to build gene.pathway data.frame for non-model organism
6.6 years ago mictadlo ▴ 10
0
votes
0
replies
2.6k
views
Comment: C: How to use topGO and KEGG with de-novo species
6.7 years ago mictadlo ▴ 10
0
votes
2
replies
1.2k
views
how to build gene.pathway data.frame for non-model organism
limma kegg topgo dataframe edger
6.7 years ago mictadlo ▴ 10
0
votes
1
reply
2.6k
views
Comment: C: How to use topGO and KEGG with de-novo species
6.7 years ago mictadlo ▴ 10
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