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3
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2
replies
229
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Need help generating BSgenome and orgdb
OrgDb BSgenome
updated 6 weeks ago by 16k • written 6 weeks ago by ▴ 70
0
votes
1
reply
431
views
Comment: Comment: Help with orgdb for non-model species via makeOrgPackageFromNCBI
7 weeks ago mat149 ▴ 70
0
votes
1
reply
431
views
Comment: Comment: Help with orgdb for non-model species via makeOrgPackageFromNCBI
7 weeks ago mat149 ▴ 70
2
votes
5
replies
431
views
Help with orgdb for non-model species via makeOrgPackageFromNCBI
AnnotationForge makeOrgPackageFromNCBI
updated 7 weeks ago by 64k • written 7 weeks ago by ▴ 70
1
vote
0
replies
1.1k
views
Comment: C: indexBam(), summarizeOverlaps() error: RNA-seq
4.8 years ago mat149 ▴ 70
2
votes
3
replies
1.1k
views
indexBam(), summarizeOverlaps() error: RNA-seq
genomicAlignments RNA-seq Rsamtools
updated 4.8 years ago by ★ 6.2k • written 4.8 years ago by ▴ 70
1
vote
0
replies
4.1k
views
Comment: C: Using GenomicFeatures to extract the upstream and downstream region of a transcr
4.8 years ago mat149 ▴ 70
0
votes
0
replies
3.2k
views
Comment: C: How to calculate log2 fold change between two groups in a microarray study
4.8 years ago mat149 ▴ 70
6
votes
3
replies
3.2k
views
How to calculate log2 fold change between two groups in a microarray study
limma
updated 4.8 years ago by 49k • written 4.8 years ago by ▴ 70
0
votes
1
reply
939
views
Making microarray probeset presence/absence calls
oligo
updated 5.8 years ago by 64k • written 5.8 years ago by ▴ 70
0
votes
0
replies
12k
views
Answer: A: Converting gene symbol list to Entrez IDs
5.8 years ago mat149 ▴ 70
4
votes
2
replies
1.7k
views
Help: extract counts from RNA-seq .bam/.bai files
counts edger
updated 6.6 years ago by ★ 28k • written 6.6 years ago by ▴ 70
5
votes
11
replies
4.5k
views
Duplicate gene ID's returned from limma microarray analysis
limma microarray
updated 19 months ago by 49k • written 6.9 years ago by ▴ 70
0
votes
0
replies
4.5k
views
Answer: A: Duplicate gene ID's returned from limma microarray analysis
6.9 years ago mat149 ▴ 70
0
votes
1
reply
4.5k
views
Comment: C: Duplicate gene ID's returned from limma microarray analysis
6.9 years ago mat149 ▴ 70
0
votes
0
replies
849
views
Comment: A: Probe sequences to Entrez Ids
6.9 years ago mat149 ▴ 70
0
votes
0
replies
1.2k
views
Comment: A: ISO help with goana
7.0 years ago mat149 ▴ 70
1
vote
5
replies
1.2k
views
ISO help with goana
limma
7.0 years ago mat149 ▴ 70
0
votes
1
reply
1.2k
views
Comment: C: ISO help with goana
7.0 years ago mat149 ▴ 70
0
votes
1
reply
2.0k
views
Comment: C: How to filter probesets from the expression set that do not contain Entrez/Gene
7.0 years ago mat149 ▴ 70
0
votes
4
replies
2.0k
views
How to filter probesets from the expression set that do not contain Entrez/Gene Symbol identifiers
oligo
updated 7.0 years ago by 64k • written 7.0 years ago by ▴ 70
0
votes
0
replies
4.0k
views
Comment: C: How to select the genes mapped to an enriched KEGG pathway (kegga)
7.0 years ago mat149 ▴ 70
0
votes
1
reply
623
views
ISO help making a heatmap from a subset of microarray probes in the expression set
oligo
updated 7.0 years ago by 64k • written 7.0 years ago by ▴ 70
0
votes
0
replies
4.0k
views
Comment: C: How to select the genes mapped to an enriched KEGG pathway (kegga)
7.0 years ago mat149 ▴ 70
0
votes
1
reply
4.0k
views
Comment: C: How to select the genes mapped to an enriched KEGG pathway (kegga)
7.0 years ago mat149 ▴ 70
4
votes
5
replies
3.0k
views
How to make a (limma) heatmap displaying gene ID's as rownames
limma microarray
7.0 years ago mat149 ▴ 70
0
votes
0
replies
3.0k
views
Comment: A: How to make a (limma) heatmap displaying gene ID's as rownames
7.0 years ago mat149 ▴ 70
0
votes
5
replies
4.0k
views
How to select the genes mapped to an enriched KEGG pathway (kegga)
kegga
updated 7.1 years ago by 49k • written 7.1 years ago by ▴ 70
0
votes
0
replies
1.7k
views
Comment: C: need help with microarray GO enrichment using goana
7.1 years ago mat149 ▴ 70
0
votes
1
reply
1.7k
views
Comment: C: need help with microarray GO enrichment using goana
7.1 years ago mat149 ▴ 70
0
votes
4
replies
1.7k
views
need help with microarray GO enrichment using goana
goana limma
updated 7.1 years ago by 49k • written 7.1 years ago by ▴ 70
0
votes
1
reply
765
views
ISO help making a colored pathway diagram to display enriched KEGG pathways
limma edger
updated 7.1 years ago by 49k • written 7.1 years ago by ▴ 70
0
votes
2
replies
797
views
Help with limma contrast/design matrices
limma contrast matrix
7.1 years ago mat149 ▴ 70
0
votes
0
replies
1.5k
views
Comment: C: Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zeb
7.1 years ago mat149 ▴ 70
0
votes
1
reply
1.5k
views
Comment: C: Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zeb
7.1 years ago mat149 ▴ 70
0
votes
1
reply
1.5k
views
Comment: C: Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zeb
7.1 years ago mat149 ▴ 70
2
votes
6
replies
1.5k
views
Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zebgene.1.1.st)
affmetrix microarray limma oligo
updated 7.1 years ago by 64k • written 7.1 years ago by ▴ 70
0
votes
2
replies
1.3k
views
Need help annotating Affymetrix 1.1ST microarrays
oligo annotation affymetrix microarrays zebrafish
updated 7.2 years ago by ★ 3.8k • written 7.2 years ago by ▴ 70
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