Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
3
votes
2
replies
300
views
ISO a solution to rank-order introns by transcript
GenomicRanges GenomicFeatures
updated 7 weeks ago by 67k • written 7 weeks ago by ▴ 80
3
votes
4
replies
569
views
Store output of matchPWM()
biostrings Biostrings
6 months ago mat149 ▴ 80
1
vote
0
replies
569
views
Answer: Answer: Store output of matchPWM()
6 months ago mat149 ▴ 80
2
votes
1
reply
330
views
Trim/Filter out-of-bounds GRanges
GenomicRanges
updated 6 months ago by 42k • written 6 months ago by ▴ 80
0
votes
1
reply
569
views
Comment: Comment: Store output of matchPWM()
6 months ago mat149 ▴ 80
0
votes
0
replies
402
views
ISO statistical test for obs-exp A,T,C,G counts by genomic range/position
GenomicRanges
9 months ago mat149 ▴ 80
0
votes
1
reply
853
views
Comment: Comment: Need help generating BSgenome and orgdb
9 months ago mat149 ▴ 80
2
votes
1
reply
544
views
Need Help w/ Subset on GRangesList
GenomicRange GenomicRanges
9 months ago mat149 ▴ 80
2
votes
4
replies
853
views
Need help generating BSgenome and orgdb
OrgDb BSgenome
13 months ago • updated 9 months ago mat149 ▴ 80
0
votes
1
reply
1.2k
views
Comment: Comment: Help with orgdb for non-model species via makeOrgPackageFromNCBI
13 months ago mat149 ▴ 80
0
votes
1
reply
1.2k
views
Comment: Comment: Help with orgdb for non-model species via makeOrgPackageFromNCBI
13 months ago mat149 ▴ 80
2
votes
5
replies
1.2k
views
Help with orgdb for non-model species via makeOrgPackageFromNCBI
AnnotationForge makeOrgPackageFromNCBI
updated 13 months ago by 67k • written 13 months ago by ▴ 80
1
vote
0
replies
1.5k
views
Comment: C: indexBam(), summarizeOverlaps() error: RNA-seq
5.8 years ago mat149 ▴ 80
2
votes
3
replies
1.5k
views
indexBam(), summarizeOverlaps() error: RNA-seq
genomicAlignments RNA-seq Rsamtools
updated 5.8 years ago by ★ 6.6k • written 5.8 years ago by ▴ 80
1
vote
0
replies
5.6k
views
Comment: C: Using GenomicFeatures to extract the upstream and downstream region of a transcr
5.8 years ago mat149 ▴ 80
0
votes
0
replies
4.4k
views
Comment: C: How to calculate log2 fold change between two groups in a microarray study
5.8 years ago mat149 ▴ 80
6
votes
3
replies
4.4k
views
How to calculate log2 fold change between two groups in a microarray study
limma
updated 5.8 years ago by 51k • written 5.8 years ago by ▴ 80
0
votes
1
reply
1.2k
views
Making microarray probeset presence/absence calls
oligo
updated 6.8 years ago by 67k • written 6.8 years ago by ▴ 80
1
vote
0
replies
13k
views
Answer: A: Converting gene symbol list to Entrez IDs
6.8 years ago mat149 ▴ 80
4
votes
2
replies
2.0k
views
Help: extract counts from RNA-seq .bam/.bai files
counts edger
updated 7.5 years ago by ★ 28k • written 7.5 years ago by ▴ 80
5
votes
11
replies
5.4k
views
Duplicate gene ID's returned from limma microarray analysis
limma microarray
updated 2.6 years ago by 51k • written 7.9 years ago by ▴ 80
0
votes
0
replies
5.4k
views
Answer: A: Duplicate gene ID's returned from limma microarray analysis
7.9 years ago mat149 ▴ 80
0
votes
1
reply
5.4k
views
Comment: C: Duplicate gene ID's returned from limma microarray analysis
7.9 years ago mat149 ▴ 80
0
votes
0
replies
1.1k
views
Comment: A: Probe sequences to Entrez Ids
7.9 years ago mat149 ▴ 80
1
vote
5
replies
1.5k
views
ISO help with goana
limma
7.9 years ago mat149 ▴ 80
0
votes
0
replies
1.5k
views
Comment: A: ISO help with goana
7.9 years ago mat149 ▴ 80
0
votes
1
reply
1.5k
views
Comment: C: ISO help with goana
7.9 years ago mat149 ▴ 80
0
votes
1
reply
2.4k
views
Comment: C: How to filter probesets from the expression set that do not contain Entrez/Gene
7.9 years ago mat149 ▴ 80
0
votes
4
replies
2.4k
views
How to filter probesets from the expression set that do not contain Entrez/Gene Symbol identifiers
oligo
updated 7.9 years ago by 67k • written 7.9 years ago by ▴ 80
0
votes
0
replies
4.8k
views
Comment: C: How to select the genes mapped to an enriched KEGG pathway (kegga)
7.9 years ago mat149 ▴ 80
0
votes
1
reply
802
views
ISO help making a heatmap from a subset of microarray probes in the expression set
oligo
updated 7.9 years ago by 67k • written 7.9 years ago by ▴ 80
0
votes
0
replies
4.8k
views
Comment: C: How to select the genes mapped to an enriched KEGG pathway (kegga)
8.0 years ago mat149 ▴ 80
0
votes
1
reply
4.8k
views
Comment: C: How to select the genes mapped to an enriched KEGG pathway (kegga)
8.0 years ago mat149 ▴ 80
4
votes
5
replies
3.5k
views
How to make a (limma) heatmap displaying gene ID's as rownames
limma microarray
8.0 years ago mat149 ▴ 80
0
votes
0
replies
3.5k
views
Comment: A: How to make a (limma) heatmap displaying gene ID's as rownames
8.0 years ago mat149 ▴ 80
0
votes
5
replies
4.8k
views
How to select the genes mapped to an enriched KEGG pathway (kegga)
kegga
updated 8.0 years ago by 51k • written 8.0 years ago by ▴ 80
0
votes
0
replies
2.1k
views
Comment: C: need help with microarray GO enrichment using goana
8.0 years ago mat149 ▴ 80
0
votes
1
reply
2.1k
views
Comment: C: need help with microarray GO enrichment using goana
8.0 years ago mat149 ▴ 80
0
votes
4
replies
2.1k
views
need help with microarray GO enrichment using goana
goana limma
updated 8.0 years ago by 51k • written 8.0 years ago by ▴ 80
0
votes
1
reply
972
views
ISO help making a colored pathway diagram to display enriched KEGG pathways
limma edger
updated 8.0 years ago by 51k • written 8.0 years ago by ▴ 80
0
votes
2
replies
1.0k
views
Help with limma contrast/design matrices
limma contrast matrix
8.0 years ago mat149 ▴ 80
0
votes
0
replies
1.9k
views
Comment: C: Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zeb
8.0 years ago mat149 ▴ 80
0
votes
1
reply
1.9k
views
Comment: C: Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zeb
8.0 years ago mat149 ▴ 80
0
votes
1
reply
1.9k
views
Comment: C: Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zeb
8.0 years ago mat149 ▴ 80
2
votes
6
replies
1.9k
views
Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zebgene.1.1.st)
affmetrix microarray limma oligo
updated 8.0 years ago by 67k • written 8.0 years ago by ▴ 80
0
votes
2
replies
1.6k
views
Need help annotating Affymetrix 1.1ST microarrays
oligo annotation affymetrix microarrays zebrafish
updated 8.2 years ago by ★ 4.1k • written 8.2 years ago by ▴ 80
46 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6