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0
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0
replies
181
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ISO statistical test for obs-exp A,T,C,G counts by genomic range/position
GenomicRanges
8 weeks ago mat149 ▴ 70
0
votes
1
reply
496
views
Comment: Comment: Need help generating BSgenome and orgdb
10 weeks ago mat149 ▴ 70
2
votes
1
reply
242
views
Need Help w/ Subset on GRangesList
GenomicRange GenomicRanges
10 weeks ago mat149 ▴ 70
2
votes
4
replies
496
views
Need help generating BSgenome and orgdb
OrgDb BSgenome
5 months ago • updated 10 weeks ago mat149 ▴ 70
0
votes
1
reply
736
views
Comment: Comment: Help with orgdb for non-model species via makeOrgPackageFromNCBI
6 months ago mat149 ▴ 70
0
votes
1
reply
736
views
Comment: Comment: Help with orgdb for non-model species via makeOrgPackageFromNCBI
6 months ago mat149 ▴ 70
2
votes
5
replies
736
views
Help with orgdb for non-model species via makeOrgPackageFromNCBI
AnnotationForge makeOrgPackageFromNCBI
updated 6 months ago by 65k • written 6 months ago by ▴ 70
1
vote
0
replies
1.2k
views
Comment: C: indexBam(), summarizeOverlaps() error: RNA-seq
5.2 years ago mat149 ▴ 70
2
votes
3
replies
1.2k
views
indexBam(), summarizeOverlaps() error: RNA-seq
genomicAlignments RNA-seq Rsamtools
updated 5.2 years ago by ★ 6.5k • written 5.2 years ago by ▴ 70
1
vote
0
replies
4.6k
views
Comment: C: Using GenomicFeatures to extract the upstream and downstream region of a transcr
5.2 years ago mat149 ▴ 70
0
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0
replies
3.7k
views
Comment: C: How to calculate log2 fold change between two groups in a microarray study
5.2 years ago mat149 ▴ 70
6
votes
3
replies
3.7k
views
How to calculate log2 fold change between two groups in a microarray study
limma
updated 5.2 years ago by 50k • written 5.2 years ago by ▴ 70
0
votes
1
reply
1.0k
views
Making microarray probeset presence/absence calls
oligo
updated 6.2 years ago by 65k • written 6.2 years ago by ▴ 70
0
votes
0
replies
12k
views
Answer: A: Converting gene symbol list to Entrez IDs
6.2 years ago mat149 ▴ 70
4
votes
2
replies
1.8k
views
Help: extract counts from RNA-seq .bam/.bai files
counts edger
updated 6.9 years ago by ★ 28k • written 6.9 years ago by ▴ 70
0
votes
0
replies
4.8k
views
Answer: A: Duplicate gene ID's returned from limma microarray analysis
7.3 years ago mat149 ▴ 70
5
votes
11
replies
4.8k
views
Duplicate gene ID's returned from limma microarray analysis
limma microarray
updated 24 months ago by 50k • written 7.3 years ago by ▴ 70
0
votes
1
reply
4.8k
views
Comment: C: Duplicate gene ID's returned from limma microarray analysis
7.3 years ago mat149 ▴ 70
0
votes
0
replies
926
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Comment: A: Probe sequences to Entrez Ids
7.3 years ago mat149 ▴ 70
0
votes
0
replies
1.3k
views
Comment: A: ISO help with goana
7.3 years ago mat149 ▴ 70
1
vote
5
replies
1.3k
views
ISO help with goana
limma
7.3 years ago mat149 ▴ 70
0
votes
1
reply
1.3k
views
Comment: C: ISO help with goana
7.3 years ago mat149 ▴ 70
0
votes
1
reply
2.2k
views
Comment: C: How to filter probesets from the expression set that do not contain Entrez/Gene
7.3 years ago mat149 ▴ 70
0
votes
4
replies
2.2k
views
How to filter probesets from the expression set that do not contain Entrez/Gene Symbol identifiers
oligo
updated 7.3 years ago by 65k • written 7.3 years ago by ▴ 70
0
votes
0
replies
4.3k
views
Comment: C: How to select the genes mapped to an enriched KEGG pathway (kegga)
7.3 years ago mat149 ▴ 70
0
votes
1
reply
670
views
ISO help making a heatmap from a subset of microarray probes in the expression set
oligo
updated 7.3 years ago by 65k • written 7.3 years ago by ▴ 70
0
votes
0
replies
4.3k
views
Comment: C: How to select the genes mapped to an enriched KEGG pathway (kegga)
7.4 years ago mat149 ▴ 70
0
votes
1
reply
4.3k
views
Comment: C: How to select the genes mapped to an enriched KEGG pathway (kegga)
7.4 years ago mat149 ▴ 70
0
votes
0
replies
3.2k
views
Comment: A: How to make a (limma) heatmap displaying gene ID's as rownames
7.4 years ago mat149 ▴ 70
4
votes
5
replies
3.2k
views
How to make a (limma) heatmap displaying gene ID's as rownames
limma microarray
7.4 years ago mat149 ▴ 70
0
votes
5
replies
4.3k
views
How to select the genes mapped to an enriched KEGG pathway (kegga)
kegga
updated 7.4 years ago by 50k • written 7.4 years ago by ▴ 70
0
votes
0
replies
1.8k
views
Comment: C: need help with microarray GO enrichment using goana
7.4 years ago mat149 ▴ 70
0
votes
1
reply
1.8k
views
Comment: C: need help with microarray GO enrichment using goana
7.4 years ago mat149 ▴ 70
0
votes
4
replies
1.8k
views
need help with microarray GO enrichment using goana
goana limma
updated 7.4 years ago by 50k • written 7.4 years ago by ▴ 70
0
votes
1
reply
836
views
ISO help making a colored pathway diagram to display enriched KEGG pathways
limma edger
updated 7.4 years ago by 50k • written 7.4 years ago by ▴ 70
0
votes
2
replies
864
views
Help with limma contrast/design matrices
limma contrast matrix
7.4 years ago mat149 ▴ 70
0
votes
0
replies
1.7k
views
Comment: C: Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zeb
7.4 years ago mat149 ▴ 70
0
votes
1
reply
1.7k
views
Comment: C: Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zeb
7.4 years ago mat149 ▴ 70
0
votes
1
reply
1.7k
views
Comment: C: Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zeb
7.5 years ago mat149 ▴ 70
2
votes
6
replies
1.7k
views
Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zebgene.1.1.st)
affmetrix microarray limma oligo
updated 7.5 years ago by 65k • written 7.5 years ago by ▴ 70
0
votes
2
replies
1.4k
views
Need help annotating Affymetrix 1.1ST microarrays
oligo annotation affymetrix microarrays zebrafish
updated 7.6 years ago by ★ 3.9k • written 7.6 years ago by ▴ 70
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