Showing : zebrafish • reset
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Need help annotating Affymetrix 1.1ST microarrays
oligo annotation affymetrix microarrays zebrafish
updated 7.9 years ago by ★ 4.0k • written 7.9 years ago by ▴ 80
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1
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Importing and Extracting Annotation
annotation zebrafish probe
updated 8.3 years ago by 66k • written 8.3 years ago by • 0
9
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1
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2.4k
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News: Ensembl release 80 is out!
biomart Ensembl zebrafish Rat 1000 genomes phase 3 News
updated 9.2 years ago by ▴ 390 • written 9.2 years ago by ▴ 800
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2
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1.2k
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Interspecies differential expression of orthologs with Edger
RNASeq Normalization Organism zebrafish edgeR
updated 9.9 years ago by 51k • written 9.9 years ago by ▴ 140
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1.3k
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Useful information about Ensembl release 76 mart databases
Transcription zebrafish Transcription zebrafish
10.0 years ago Thomas Maurel ▴ 800
0
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2
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1.9k
views
TxDb file for Drerio (ie zebrafish)
Organism zebrafish CRISPRseek Organism zebrafish CRISPRseek
updated 10.4 years ago by 66k • written 10.4 years ago by ▴ 10
1
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1
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1.9k
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Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 10.8 years ago by 66k • written 10.8 years ago by ▴ 80
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1
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1.4k
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ChIPpeakAnno, getAnnotation question
Annotation zebrafish convert biomaRt ChIPpeakAnno Annotation zebrafish convert biomaRt
updated 10.9 years ago by ★ 4.3k • written 10.9 years ago by ▴ 10
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1
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1.4k
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ChIPpeakAnno, getAnnotation question
Annotation GO zebrafish convert biomaRt ChIPpeakAnno Annotation GO zebrafish convert
updated 10.9 years ago by ★ 4.3k • written 10.9 years ago by ★ 13k
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1
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1.1k
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affymtrix transcript_cluster categories
Normalization zebrafish Normalization zebrafish
updated 10.9 years ago by 66k • written 10.9 years ago by ▴ 80
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2
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1.3k
views
blast probe clusters when using Affymetrix Gene Array Strips
zebrafish zebrafish
updated 10.9 years ago by 66k • written 10.9 years ago by ▴ 80
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0
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1.6k
views
Useful information about Ensembl release 71 mart databases
zebrafish PolyPhen SIFT affy genomes zebrafish PolyPhen SIFT affy genomes
11.3 years ago Thomas Maurel ▴ 800
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0
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1.3k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt ideogram genomes zebrafish biomaRt ideogram genomes
11.5 years ago florian.hahne@novartis.com ★ 1.6k
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1.8k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt zebrafish biomaRt
updated 11.5 years ago by ★ 1.6k • written 11.5 years ago by ★ 13k
1
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1
reply
3.0k
views
goseq/nullp with non-native identifiers
Annotation GO zebrafish goseq Annotation GO zebrafish goseq
updated 11.9 years ago by ▴ 100 • written 11.9 years ago by ▴ 140
0
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1
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1.5k
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Useful information about Ensembl release 67 mart databases
miRNA GO Caenorhabditis elegans Sus scrofa zebrafish PolyPhen SIFT miRNA GO Sus scrofa
12.2 years ago Thomas Maurel ▴ 800
0
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9
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1.9k
views
Mapping microarray probes to the genome using findOverlaps
Microarray Alignment Annotation zebrafish probe Biostrings GenomicFeatures Microarray
updated 13.4 years ago by 21k • written 13.4 years ago by 16k
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3
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1.7k
views
Mapping microarray probes to the genome using findOverlaps
Alignment Annotation zebrafish probe Alignment Annotation zebrafish probe
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 140
0
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0
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1.0k
views
Agi4x44PreProcess - filter.probes function
Annotation GUI zebrafish probe PROcess Annotation GUI zebrafish probe PROcess
13.8 years ago Neel Aluru ▴ 460
0
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0
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1.1k
views
Agi4x44PreProcess
GUI zebrafish probe AgiMicroRna GUI zebrafish probe AgiMicroRna
13.8 years ago Neel Aluru ▴ 460
0
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1
reply
1.2k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation zebrafish probe DECIPHER Annotation zebrafish probe DECIPHER
updated 14.0 years ago by ★ 7.2k • written 14.0 years ago by ▴ 40
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1
reply
1.1k
views
Annotation in Agi4x44PreProcess
Annotation zebrafish probe Agi4x44PreProcess Annotation zebrafish probe Agi4x44PreProcess
updated 14.0 years ago by ★ 7.2k • written 14.0 years ago by ▴ 40
0
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0
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1.5k
views
AgiMicroRna - FilterMicroRna and SignificantMicroRna function
miRNA zebrafish probe AgiMicroRna miRNA zebrafish probe AgiMicroRna
14.2 years ago Neel Aluru ▴ 460
0
votes
1
reply
1.0k
views
GOstats - zebrafish
Annotation GO zebrafish probe Annotation GO zebrafish probe
updated 14.2 years ago by 66k • written 14.2 years ago by ▴ 460
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0
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1.2k
views
Ensembl mart release 57: Useful information
SNP GO Homo sapiens zebrafish SNP GO Homo sapiens zebrafish
14.4 years ago Rhoda Kinsella ▴ 660
0
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6
replies
1.2k
views
annaffy can't saveHTML
Annotation zebrafish Annotation zebrafish
updated 14.5 years ago by 66k • written 14.5 years ago by ★ 1.5k
0
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1
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748
views
GOstats testing using EntrezGene IDs not in chip-specific annotation package?
GO zebrafish probe affy GOstats AnnotationDbi GO zebrafish probe affy GOstats
updated 14.5 years ago by ★ 2.0k • written 14.5 years ago by ★ 2.0k
0
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5
replies
1.3k
views
Agilent zebrafish4x44 database
zebrafish zebrafish
updated 14.7 years ago by ★ 1.3k • written 14.7 years ago by ▴ 460
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0
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842
views
Bsgenome Zv7 sequence data
Cancer Danio rerio zebrafish Cancer Danio rerio zebrafish
15.0 years ago Hervé Pagès 16k
0
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1
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891
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siggenes: sam2html + affymetrix zebrafish
zebrafish zebrafish
15.1 years ago Bio Sam ▴ 60
0
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0
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998
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problem using annotation database with annaffy
Annotation GO zebrafish annaffy Annotation GO zebrafish annaffy
15.2 years ago Georg Otto ▴ 510
0
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0
replies
974
views
Ensembl mart release 54: Useful information
Coverage zebrafish Coverage zebrafish
15.2 years ago Rhoda Kinsella ▴ 660
0
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0
replies
915
views
JoVE: New Video Articles on Biomedical Research Techniques
zebrafish zebrafish
15.2 years ago Moshe Pritsker, Editor, JoVE ▴ 20
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1
reply
1.4k
views
Group-wise gcrma normalization
Microarray Normalization Clustering zebrafish probe gcrma Microarray Normalization probe
updated 15.4 years ago by ★ 6.5k • written 15.4 years ago by ▴ 30
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2
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1.7k
views
Help with loading newly created custom annotation db into R session
Annotation GO GUI zebrafish probe Annotation GO GUI zebrafish probe
updated 15.6 years ago by 66k • written 15.6 years ago by ▴ 300
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1
reply
835
views
zebrafish annotation
Annotation zebrafish Annotation zebrafish
updated 15.9 years ago by ★ 7.2k • written 15.9 years ago by ▴ 60
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2
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1.5k
views
agilent zebrafish array annotation
Annotation zebrafish AnnBuilder PROcess AnnotationDbi Annotation zebrafish AnnBuilder
16.3 years ago Georg Otto ▴ 510
0
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0
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889
views
homologs for xenopus laevis
Xenopus laevis zebrafish biomaRt Xenopus laevis zebrafish biomaRt
16.9 years ago Mayte Suarez-Farinas ▴ 510
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2
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1.0k
views
simpleaffy QCstats and affyQAReport repost
zebrafish probe affy zebrafish probe affy
updated 17.0 years ago by ★ 1.1k • written 17.0 years ago by ▴ 70
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votes
3
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1.2k
views
chromosome plot
zebrafish geneplotter zebrafish geneplotter
updated 17.2 years ago by ★ 7.4k • written 17.2 years ago by ▴ 160
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0
replies
866
views
agilent zebrafish array annotation package
zebrafish zebrafish
18.6 years ago Georg Otto ▴ 510
0
votes
1
reply
1.2k
views
biomaRt gives only NA output
drosgenome1 zebrafish biomaRt drosgenome1 zebrafish biomaRt
updated 18.9 years ago by ▴ 420 • written 18.9 years ago by ▴ 150
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0
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1.3k
views
biomaRt zebrafish
zebrafish biomaRt zebrafish biomaRt
19.0 years ago Steffen Durinck ▴ 420
0
votes
0
replies
1.2k
views
biomaRt zebrafish
zebrafish biomaRt zebrafish biomaRt
19.0 years ago Georg Otto ▴ 510
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votes
2
replies
1.2k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 19.0 years ago by ▴ 780 • written 19.0 years ago by ★ 1.4k
0
votes
1
reply
1.3k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 19.0 years ago by ★ 1.4k • written 19.0 years ago by ★ 1.1k
0
votes
4
replies
1.2k
views
Error in AnnBuilder writeAnnData2Pkg
Annotation zebrafish AnnBuilder Annotation zebrafish AnnBuilder
updated 19.2 years ago by ★ 2.9k • written 19.2 years ago by ▴ 510
0
votes
0
replies
851
views
QC questions
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
19.8 years ago Crispin Miller ★ 1.1k
0
votes
1
reply
794
views
problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 19.8 years ago by 66k • written 19.8 years ago by ▴ 510
0
votes
1
reply
764
views
affymetrix zebrafish chip
zebrafish zebrafish
updated 20.1 years ago by 66k • written 20.1 years ago by ▴ 140
50 results • Page 1 of 1
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Comment: 'path' must be string by James W. MacDonald 66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string by cpierce2 • 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest by Robert • 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta by Guido Hooiveld ★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta by Michael Love 42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
Awards • All
Popular Question to Lluís Revilla Sancho ▴ 730
Popular Question to maltethodberg ▴ 180
Scholar to Michael Love 42k
Popular Question to Leonardo Collado Torres ★ 1.1k
Scholar to Gordon Smyth 51k
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