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0
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2
replies
1.0k
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Comment:
Comment: why is downloading the .tar.gz file for a given bioconductor package, then insta
8 months ago
Ndimensional
▴ 20
3
votes
5
replies
1.0k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 8 months ago by
Vincent J. Carey, Jr.
6.7k • written 8 months ago by
Ndimensional
▴ 20
0
votes
1
reply
572
views
Comment:
Comment: lfc direction of effect flipped for ashr, apeGLM, but accurate to biological dat
8 months ago
Ndimensional
▴ 20
0
votes
4
replies
572
views
lfc direction of effect flipped for ashr, apeGLM, but accurate to biological data for non-shrunken
DESeq2
apeglm
DESeq
ApeGLM
Ashr
updated 8 months ago by
Michael Love
41k • written 8 months ago by
Ndimensional
▴ 20
1
vote
0
replies
742
views
Comment:
Comment: clinicalData() is not returning all columns from cBioPortal
8 months ago
Ndimensional
▴ 20
0
votes
0
replies
1.1k
views
Comment:
Comment: Importing RSEM processed data already formatted as a summarized experiment into
8 months ago
Ndimensional
▴ 20
0
votes
0
replies
1.1k
views
Comment:
Comment: Importing RSEM processed data already formatted as a summarized experiment into
8 months ago
Ndimensional
▴ 20
0
votes
0
replies
1.1k
views
Comment:
Comment: Importing RSEM processed data already formatted as a summarized experiment into
8 months ago
Ndimensional
▴ 20
0
votes
0
replies
1.1k
views
Comment:
Comment: Importing RSEM processed data already formatted as a summarized experiment into
8 months ago
Ndimensional
▴ 20
0
votes
0
replies
1.1k
views
Comment:
Comment: Importing RSEM processed data already formatted as a summarized experiment into
8 months ago
Ndimensional
▴ 20
0
votes
0
replies
1.1k
views
Comment:
Comment: Importing RSEM processed data already formatted as a summarized experiment into
8 months ago
Ndimensional
▴ 20
0
votes
0
replies
1.1k
views
Comment:
Comment: Importing RSEM processed data already formatted as a summarized experiment into
8 months ago
Ndimensional
▴ 20
2
votes
9
replies
1.1k
views
Importing RSEM processed data already formatted as a summarized experiment into DESeq2
tximport
tximportData
DESeq2
9 months ago • updated 8 months ago
Ndimensional
▴ 20
0
votes
0
replies
571
views
Comment:
Comment: DESeq: relaxing gene filtering thresholds increases mean-Sd correlation, but rec
9 months ago
Ndimensional
▴ 20
0
votes
0
replies
991
views
Comment:
Comment: Failure of beta estimates to converge in DESeq2 despite noncollinearity and reas
9 months ago
Ndimensional
▴ 20
1
vote
3
replies
571
views
DESeq: relaxing gene filtering thresholds increases mean-Sd correlation, but recovers many important genes
metaanalysis
meanSd
genefilter
DESeq2
9 months ago
Ndimensional
▴ 20
0
votes
0
replies
571
views
Comment:
Comment: DESeq: relaxing gene filtering thresholds increases mean-Sd correlation, but rec
9 months ago
Ndimensional
▴ 20
2
votes
8
replies
991
views
Failure of beta estimates to converge in DESeq2 despite noncollinearity and reasonable counts
converge
beta
DESeq2
9 months ago
Ndimensional
▴ 20
1
vote
0
replies
991
views
Answer:
Answer: Failure of beta estimates to converge in DESeq2 despite noncollinearity and reas
9 months ago
Ndimensional
▴ 20
0
votes
0
replies
991
views
Comment:
Comment: Failure of beta estimates to converge in DESeq2 despite noncollinearity and reas
9 months ago
Ndimensional
▴ 20
0
votes
1
reply
991
views
Comment:
Comment: Failure of beta estimates to converge in DESeq2 despite noncollinearity and reas
9 months ago
Ndimensional
▴ 20
0
votes
1
reply
676
views
maEndtoEnd does not load on Mac version 3.6.0 or 3.6.2
maEndtoEnd
4.0 years ago
Ndimensional
▴ 20
0
votes
0
replies
678
views
Comment:
C: RNA-Seq analysis with DESeq2: showing two conditions do *not* significantly diff
4.0 years ago
Ndimensional
▴ 20
4
votes
3
replies
678
views
RNA-Seq analysis with DESeq2: showing two conditions do *not* significantly differ
deseq2
RNA-Seq
uniform distribution
data visualization
updated 4.0 years ago by
Steve Lianoglou
★ 13k • written 4.1 years ago by
Ndimensional
▴ 20
0
votes
1
reply
1.3k
views
Using Effect Coding or Orthogonal Coding instead of dummy coding in DESeq2?
deseq2
multiple factor design
interactions
orthogonal coding
effect coding
updated 6.3 years ago by
Peter Langfelder
★ 2.9k • written 6.3 years ago by
Ndimensional
▴ 20
0
votes
1
reply
1.3k
views
Comment:
C: Please help me verify my compensation and spill matrices makes sense ( openCyto
6.5 years ago
Ndimensional
▴ 20
1
vote
3
replies
1.3k
views
Please help me verify my compensation and spill matrices makes sense ( openCyto package, in flowCore )
flow cytometry
flowcore
spillover
compensation matrix
updated 6.5 years ago by
SamGG
▴ 330 • written 6.5 years ago by
Ndimensional
▴ 20
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