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Possible ways to select differential expressed genes using DeSeq2 or edgeR
R deseq2 edger differential gene expression fold change
updated 19 months ago by ★ 3.6k • written 5.4 years ago by ▴ 50
0
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2
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742
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How to create design matrix for differential analysis within the same cell-line samples?
edger r differentialanalysis rnaseq designmatrix
updated 4.6 years ago by ★ 28k • written 4.6 years ago by ▴ 50
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0
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Comment: C: How to create design matrix for differential analysis within the same cell-line
4.6 years ago Beginner ▴ 50
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Comment: C: Calculating FPKM from raw counts data using fpkm() in deseq2
5.2 years ago Beginner ▴ 50
1
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5
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10k
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Calculating FPKM from raw counts data using fpkm() in deseq2
deseq2 r fpkm() geneexpression
updated 5.2 years ago by 41k • written 5.2 years ago by ▴ 50
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0
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6.0k
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Comment: C: Voom transformation from counts and normalization to negative values
5.2 years ago Beginner ▴ 50
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6.0k
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Comment: C: Voom transformation from counts and normalization to negative values
5.2 years ago Beginner ▴ 50
0
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1
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6.0k
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Comment: C: Voom transformation from counts and normalization to negative values
5.2 years ago Beginner ▴ 50
0
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1
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6.0k
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Comment: C: Voom transformation from counts and normalization to negative values
5.2 years ago Beginner ▴ 50
8
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8
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6.0k
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Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 5.2 years ago by 7.8k • written 5.2 years ago by ▴ 50
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1
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1.8k
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Comment: C: DNA methylation analysis without raw data IDAT files
5.3 years ago Beginner ▴ 50
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0
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Comment: C: DNA methylation analysis without raw data IDAT files
5.3 years ago Beginner ▴ 50
0
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5
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1.8k
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DNA methylation analysis without raw data IDAT files
r illimina 450k methylation minfi champ tcga
updated 5.3 years ago by ▴ 270 • written 5.3 years ago by ▴ 50
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0
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4.3k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
5.4 years ago Beginner ▴ 50
0
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1
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4.3k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
5.4 years ago Beginner ▴ 50
0
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1
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4.3k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
5.4 years ago Beginner ▴ 50
0
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1
reply
4.3k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
5.4 years ago Beginner ▴ 50
0
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1
reply
4.3k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
5.4 years ago Beginner ▴ 50
0
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2
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4.3k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
5.4 years ago Beginner ▴ 50
0
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1
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985
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Comment: C: Differential analysis based on selection of random samples
5.4 years ago Beginner ▴ 50
0
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1
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985
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Comment: C: Differential analysis based on selection of random samples
5.4 years ago Beginner ▴ 50
1
vote
5
replies
985
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Differential analysis based on selection of random samples
r differential gene expression deseq2 bioconductor rnaseq
updated 5.4 years ago by 41k • written 5.4 years ago by ▴ 50
0
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2
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3.4k
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Comment: C: Differentially expressed genes selection with FC and FDR cutoff
updated 5.5 years ago by 49k • written 5.5 years ago by ▴ 50
7
votes
15
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3.4k
views
Differentially expressed genes selection with FC and FDR cutoff
edgeR rnaseq r bioconductor
updated 5.5 years ago by 49k • written 5.5 years ago by ▴ 50
0
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1
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3.4k
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Comment: C: Differentially expressed genes selection with FC and FDR cutoff
5.5 years ago Beginner ▴ 50
0
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1
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3.4k
views
Comment: C: Differentially expressed genes selection with FC and FDR cutoff
5.5 years ago Beginner ▴ 50
0
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1
reply
3.4k
views
Comment: C: Differentially expressed genes selection with FC and FDR cutoff
5.5 years ago Beginner ▴ 50
0
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1
reply
3.4k
views
Comment: C: Differentially expressed genes selection with FC and FDR cutoff
5.5 years ago Beginner ▴ 50
0
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2
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3.4k
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Comment: C: Differentially expressed genes selection with FC and FDR cutoff
5.5 years ago Beginner ▴ 50
0
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0
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5.2k
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Comment: C: scaling data for clustering heat map
5.5 years ago Beginner ▴ 50
7
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6
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5.2k
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scaling data for clustering heat map
edger heatmap clustering differential gene expression rnaseq
updated 5.5 years ago by 49k • written 5.5 years ago by ▴ 50
1
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0
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5.2k
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Comment: C: scaling data for clustering heat map
5.5 years ago Beginner ▴ 50
0
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1
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5.2k
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Comment: C: scaling data for clustering heat map
5.5 years ago Beginner ▴ 50
2
votes
1
reply
2.0k
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Error in TCGAquery of TCGAbiolinks Package
software error bioconductor tcgabiolinks tcga r
updated 5.5 years ago by ▴ 90 • written 5.5 years ago by ▴ 50
34 results • Page 1 of 1
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