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Possible ways to select differential expressed genes using DeSeq2 or edgeR
R deseq2 edger differential gene expression fold change
updated 3.5 years ago by ★ 5.0k • written 7.3 years ago by ▴ 60
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2
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How to create design matrix for differential analysis within the same cell-line samples?
edger r differentialanalysis rnaseq designmatrix
updated 6.5 years ago by ★ 29k • written 6.5 years ago by ▴ 60
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Comment: C: How to create design matrix for differential analysis within the same cell-line
6.5 years ago Beginner ▴ 60
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1
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Comment: C: Calculating FPKM from raw counts data using fpkm() in deseq2
7.1 years ago Beginner ▴ 60
2
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5
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14k
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Calculating FPKM from raw counts data using fpkm() in deseq2
deseq2 r fpkm() geneexpression
updated 7.1 years ago by 43k • written 7.1 years ago by ▴ 60
0
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0
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8.8k
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Comment: C: Voom transformation from counts and normalization to negative values
7.1 years ago Beginner ▴ 60
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1
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8.8k
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Comment: C: Voom transformation from counts and normalization to negative values
7.1 years ago Beginner ▴ 60
0
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1
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8.8k
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Comment: C: Voom transformation from counts and normalization to negative values
7.1 years ago Beginner ▴ 60
0
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1
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8.8k
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Comment: C: Voom transformation from counts and normalization to negative values
7.1 years ago Beginner ▴ 60
8
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8
replies
8.8k
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Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 7.1 years ago by ★ 7.9k • written 7.1 years ago by ▴ 60
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1
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3.0k
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Comment: C: DNA methylation analysis without raw data IDAT files
7.2 years ago Beginner ▴ 60
0
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0
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Comment: C: DNA methylation analysis without raw data IDAT files
7.2 years ago Beginner ▴ 60
0
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5
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3.0k
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DNA methylation analysis without raw data IDAT files
r illimina 450k methylation minfi champ tcga
updated 7.2 years ago by ▴ 290 • written 7.2 years ago by ▴ 60
0
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0
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7.4k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
7.3 years ago Beginner ▴ 60
0
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1
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7.4k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
7.3 years ago Beginner ▴ 60
0
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1
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7.4k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
7.3 years ago Beginner ▴ 60
0
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1
reply
7.4k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
7.3 years ago Beginner ▴ 60
0
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1
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7.4k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
7.3 years ago Beginner ▴ 60
0
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2
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7.4k
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Comment: C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
7.3 years ago Beginner ▴ 60
0
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1
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1.6k
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Comment: C: Differential analysis based on selection of random samples
7.4 years ago Beginner ▴ 60
0
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1
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1.6k
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Comment: C: Differential analysis based on selection of random samples
7.4 years ago Beginner ▴ 60
1
vote
5
replies
1.6k
views
Differential analysis based on selection of random samples
r differential gene expression deseq2 bioconductor rnaseq
updated 7.4 years ago by 43k • written 7.4 years ago by ▴ 60
0
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2
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7.6k
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Comment: C: Differentially expressed genes selection with FC and FDR cutoff
updated 7.4 years ago by 53k • written 7.4 years ago by ▴ 60
7
votes
15
replies
7.6k
views
Differentially expressed genes selection with FC and FDR cutoff
edgeR rnaseq r bioconductor
updated 7.4 years ago by 53k • written 7.4 years ago by ▴ 60
0
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1
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7.6k
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Comment: C: Differentially expressed genes selection with FC and FDR cutoff
7.4 years ago Beginner ▴ 60
0
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1
reply
7.6k
views
Comment: C: Differentially expressed genes selection with FC and FDR cutoff
7.4 years ago Beginner ▴ 60
0
votes
1
reply
7.6k
views
Comment: C: Differentially expressed genes selection with FC and FDR cutoff
7.4 years ago Beginner ▴ 60
0
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1
reply
7.6k
views
Comment: C: Differentially expressed genes selection with FC and FDR cutoff
7.4 years ago Beginner ▴ 60
0
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2
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7.6k
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Comment: C: Differentially expressed genes selection with FC and FDR cutoff
7.4 years ago Beginner ▴ 60
0
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0
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7.3k
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Comment: C: scaling data for clustering heat map
7.5 years ago Beginner ▴ 60
7
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6
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7.3k
views
scaling data for clustering heat map
edger heatmap clustering differential gene expression rnaseq
updated 7.5 years ago by 53k • written 7.5 years ago by ▴ 60
1
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0
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7.3k
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Comment: C: scaling data for clustering heat map
7.5 years ago Beginner ▴ 60
0
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1
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7.3k
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Comment: C: scaling data for clustering heat map
7.5 years ago Beginner ▴ 60
2
votes
1
reply
2.6k
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Error in TCGAquery of TCGAbiolinks Package
software error bioconductor tcgabiolinks tcga r
updated 7.5 years ago by ▴ 90 • written 7.5 years ago by ▴ 60
34 results • Page 1 of 1
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