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5
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14
replies
5.7k
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Possible ways to select differential expressed genes using DeSeq2 or edgeR
R
deseq2
edger
differential gene expression
fold change
updated 2.6 years ago by
ATpoint
★ 4.6k • written 6.4 years ago by
Beginner
▴ 60
0
votes
2
replies
1.0k
views
How to create design matrix for differential analysis within the same cell-line samples?
edger
r
differentialanalysis
rnaseq
designmatrix
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
Beginner
▴ 60
0
votes
0
replies
1.0k
views
Comment:
C: How to create design matrix for differential analysis within the same cell-line
5.6 years ago
Beginner
▴ 60
0
votes
1
reply
13k
views
Comment:
C: Calculating FPKM from raw counts data using fpkm() in deseq2
6.2 years ago
Beginner
▴ 60
2
votes
5
replies
13k
views
Calculating FPKM from raw counts data using fpkm() in deseq2
deseq2
r
fpkm()
geneexpression
updated 6.2 years ago by
Michael Love
43k • written 6.2 years ago by
Beginner
▴ 60
0
votes
0
replies
7.7k
views
Comment:
C: Voom transformation from counts and normalization to negative values
6.2 years ago
Beginner
▴ 60
0
votes
1
reply
7.7k
views
Comment:
C: Voom transformation from counts and normalization to negative values
6.2 years ago
Beginner
▴ 60
0
votes
1
reply
7.7k
views
Comment:
C: Voom transformation from counts and normalization to negative values
6.2 years ago
Beginner
▴ 60
0
votes
1
reply
7.7k
views
Comment:
C: Voom transformation from counts and normalization to negative values
6.2 years ago
Beginner
▴ 60
8
votes
8
replies
7.7k
views
Voom transformation from counts and normalization to negative values
rnaseq
voom
limma
tcga
statistics
updated 6.2 years ago by
Ryan C. Thompson
★ 7.9k • written 6.2 years ago by
Beginner
▴ 60
0
votes
1
reply
2.5k
views
Comment:
C: DNA methylation analysis without raw data IDAT files
6.3 years ago
Beginner
▴ 60
0
votes
0
replies
2.5k
views
Comment:
C: DNA methylation analysis without raw data IDAT files
6.3 years ago
Beginner
▴ 60
0
votes
5
replies
2.5k
views
DNA methylation analysis without raw data IDAT files
r
illimina 450k methylation
minfi
champ
tcga
updated 6.3 years ago by
Yuan Tian
▴ 290 • written 6.3 years ago by
Beginner
▴ 60
0
votes
0
replies
5.7k
views
Comment:
C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
6.4 years ago
Beginner
▴ 60
0
votes
1
reply
5.7k
views
Comment:
C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
6.4 years ago
Beginner
▴ 60
0
votes
1
reply
5.7k
views
Comment:
C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
6.4 years ago
Beginner
▴ 60
0
votes
1
reply
5.7k
views
Comment:
C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
6.4 years ago
Beginner
▴ 60
0
votes
1
reply
5.7k
views
Comment:
C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
6.4 years ago
Beginner
▴ 60
0
votes
2
replies
5.7k
views
Comment:
C: Possible ways to select differential expressed genes using DeSeq2 or edgeR
6.4 years ago
Beginner
▴ 60
0
votes
1
reply
1.3k
views
Comment:
C: Differential analysis based on selection of random samples
6.4 years ago
Beginner
▴ 60
0
votes
1
reply
1.3k
views
Comment:
C: Differential analysis based on selection of random samples
6.4 years ago
Beginner
▴ 60
1
vote
5
replies
1.3k
views
Differential analysis based on selection of random samples
r
differential gene expression
deseq2
bioconductor
rnaseq
updated 6.4 years ago by
Michael Love
43k • written 6.4 years ago by
Beginner
▴ 60
0
votes
2
replies
5.4k
views
Comment:
C: Differentially expressed genes selection with FC and FDR cutoff
updated 6.5 years ago by
Gordon Smyth
52k • written 6.5 years ago by
Beginner
▴ 60
7
votes
15
replies
5.4k
views
Differentially expressed genes selection with FC and FDR cutoff
edgeR
rnaseq
r
bioconductor
updated 6.5 years ago by
Gordon Smyth
52k • written 6.5 years ago by
Beginner
▴ 60
0
votes
1
reply
5.4k
views
Comment:
C: Differentially expressed genes selection with FC and FDR cutoff
6.5 years ago
Beginner
▴ 60
0
votes
1
reply
5.4k
views
Comment:
C: Differentially expressed genes selection with FC and FDR cutoff
6.5 years ago
Beginner
▴ 60
0
votes
1
reply
5.4k
views
Comment:
C: Differentially expressed genes selection with FC and FDR cutoff
6.5 years ago
Beginner
▴ 60
0
votes
1
reply
5.4k
views
Comment:
C: Differentially expressed genes selection with FC and FDR cutoff
6.5 years ago
Beginner
▴ 60
0
votes
2
replies
5.4k
views
Comment:
C: Differentially expressed genes selection with FC and FDR cutoff
6.5 years ago
Beginner
▴ 60
0
votes
0
replies
6.4k
views
Comment:
C: scaling data for clustering heat map
6.5 years ago
Beginner
▴ 60
7
votes
6
replies
6.4k
views
scaling data for clustering heat map
edger
heatmap
clustering
differential gene expression
rnaseq
updated 6.5 years ago by
Gordon Smyth
52k • written 6.5 years ago by
Beginner
▴ 60
1
vote
0
replies
6.4k
views
Comment:
C: scaling data for clustering heat map
6.5 years ago
Beginner
▴ 60
0
votes
1
reply
6.4k
views
Comment:
C: scaling data for clustering heat map
6.5 years ago
Beginner
▴ 60
2
votes
1
reply
2.4k
views
Error in TCGAquery of TCGAbiolinks Package
software error
bioconductor
tcgabiolinks
tcga
r
updated 6.5 years ago by
Benjamin Ostendorf
▴ 90 • written 6.5 years ago by
Beginner
▴ 60
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