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Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 14 months ago by ▴ 760 • written 14 months ago by ▴ 30
0
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1
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1.5k
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Comment: Comment: DESeq2: Repetitive padj values?
2.3 years ago vanbelj ▴ 30
0
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1
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1.5k
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Comment: Comment: DESeq2: Repetitive padj values?
2.3 years ago vanbelj ▴ 30
0
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1
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1.5k
views
Comment: Comment: DESeq2: Repetitive padj values?
2.3 years ago vanbelj ▴ 30
4
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7
replies
1.5k
views
DESeq2: Repetitive padj values?
DESeq2
updated 2.3 years ago by 43k • written 2.3 years ago by ▴ 30
0
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0
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1.3k
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Comment: Comment: ChIP-Seq Analysis: Comparing Unannotated Peaks with DESeq2
2.4 years ago vanbelj ▴ 30
0
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2
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1.3k
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ChIP-Seq Analysis: Comparing Unannotated Peaks with DESeq2
DESeq2 MACS2
2.4 years ago vanbelj ▴ 30
2
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6
replies
1.8k
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DESeq2: relevel() unsuccessfully setting control group
DESeq2
updated 2.8 years ago by • 0 • written 4.1 years ago by ▴ 30
3
votes
4
replies
1.9k
views
DESeq2: Extracting Averaged Counts Information from dds and rld
DESeq2
3.0 years ago • updated 2.9 years ago vanbelj ▴ 30
1
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0
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1.9k
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Answer: Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
2.9 years ago vanbelj ▴ 30
0
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1
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1.9k
views
Comment: Comment: DESeq2: Extracting Averaged Counts Information from dds and rld
3.0 years ago vanbelj ▴ 30
1
vote
2
replies
2.2k
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Extracting Score/Coverage From GRange Object
IRanges rtracklayer GenomicRanges
3.0 years ago vanbelj ▴ 30
1
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0
replies
2.2k
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Answer: Answer: Extracting Score/Coverage From GRange Object
3.0 years ago vanbelj ▴ 30
0
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0
replies
2.2k
views
Comment: Comment: Extracting Score/Coverage From GRange Object
3.0 years ago vanbelj ▴ 30
1
vote
1
reply
950
views
DESeq2 With Ratios from Nascent RNA-seq (Conversion Rate from slamdunk)
DESeq2
updated 3.1 years ago by 43k • written 3.1 years ago by ▴ 30
0
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1
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1.9k
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Comment: Comment: DESeq2: Subset Results from 2-Factor Design
3.1 years ago vanbelj ▴ 30
0
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1
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1.9k
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Comment: Comment: DESeq2: Subset Results from 2-Factor Design
3.2 years ago vanbelj ▴ 30
0
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1
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1.9k
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Comment: Comment: DESeq2: Subset Results from 2-Factor Design
3.2 years ago vanbelj ▴ 30
4
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7
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1.9k
views
DESeq2: Subset Results from 2-Factor Design
DESeq2
updated 3.1 years ago by 43k • written 3.2 years ago by ▴ 30
0
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1
reply
3.9k
views
ComplexHeatmap: setting column_order changes plotted values
ComplexHeatmap
4.1 years ago vanbelj ▴ 30
0
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0
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3.9k
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Answer: Answer: ComplexHeatmap: setting column_order changes plotted values
4.1 years ago vanbelj ▴ 30
0
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1
reply
916
views
Metagene Analysis in R - Best Options?
metagene2
4.1 years ago vanbelj ▴ 30
0
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0
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916
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Answer: Answer: Metagene Analysis in R - Best Options?
4.1 years ago vanbelj ▴ 30
0
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0
replies
1.3k
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Comment: Comment: metage problem with DESeq
4.1 years ago vanbelj ▴ 30
0
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0
replies
1.8k
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Comment: Comment: DESeq2: relevel() unsuccessfully setting control group
4.1 years ago vanbelj ▴ 30
0
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1
reply
1.8k
views
Comment: Comment: DESeq2: relevel() unsuccessfully setting control group
4.1 years ago vanbelj ▴ 30
0
votes
1
reply
38k
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Comment: Comment: DESeq2 / PCA Analysis of RNA-seq Data - Best Explanatory Resource?
4.1 years ago vanbelj ▴ 30
0
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1
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38k
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Comment: Comment: DESeq2 / PCA Analysis of RNA-seq Data - Best Explanatory Resource?
4.1 years ago vanbelj ▴ 30
9
votes
6
replies
38k
views
DESeq2 / PCA Analysis of RNA-seq Data - Best Explanatory Resource?
DESeq2 pcaExplorer
updated 4.1 years ago by 43k • written 4.1 years ago by ▴ 30
0
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1
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2.9k
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Comment: Comment: Subtracting Background Signal Before DESeq Analysis
4.2 years ago vanbelj ▴ 30
0
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1
reply
2.9k
views
Comment: Comment: Subtracting Background Signal Before DESeq Analysis
4.2 years ago vanbelj ▴ 30
0
votes
7
replies
2.9k
views
Subtracting Background Signal Before DESeq Analysis
Salmon DESeq2
updated 3.9 years ago by 43k • written 4.2 years ago by ▴ 30
2
votes
3
replies
2.4k
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 4.2 years ago by 68k • written 4.2 years ago by ▴ 30
0
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0
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2.4k
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Comment: Comment: Gene Ontology Analysis of DE Genes
4.2 years ago vanbelj ▴ 30
0
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1
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2.3k
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Comment: Comment: DESeq2: Significant padj and LFC in a 0 vs. 20 counts comparison?
4.3 years ago vanbelj ▴ 30
0
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1
reply
2.3k
views
Comment: Comment: DESeq2: Significant padj and LFC in a 0 vs. 20 counts comparison?
4.3 years ago vanbelj ▴ 30
4
votes
14
replies
2.3k
views
DESeq2: Significant padj and LFC in a 0 vs. 20 counts comparison?
DESeq2
updated 4.2 years ago by • 0 • written 4.3 years ago by ▴ 30
0
votes
1
reply
11k
views
Comment: Comment: DESeq2: Multiple Comparisons with Different Conditions and Replicates
4.3 years ago vanbelj ▴ 30
2
votes
3
replies
11k
views
DESeq2: Multiple Comparisons with Different Conditions and Replicates
Interactions DESeq2 Design
updated 4.3 years ago by ★ 4.0k • written 4.3 years ago by ▴ 30
0
votes
1
reply
1.9k
views
Comment: C: GRanges/GFeatures: Retain all parent columns in cdsByOverlaps output
4.7 years ago vanbelj ▴ 30
0
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1
reply
1.9k
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Comment: C: GRanges/GFeatures: Retain all parent columns in cdsByOverlaps output
4.7 years ago vanbelj ▴ 30
0
votes
1
reply
1.9k
views
Comment: C: GRanges/GFeatures: Retain all parent columns in cdsByOverlaps output
4.7 years ago vanbelj ▴ 30
3
votes
7
replies
1.9k
views
GRanges/GFeatures: Retain all parent columns in cdsByOverlaps output
GRanges GenomicRanges GenomicFeatures cdsByOverlaps DiffBind
updated 4.7 years ago by 68k • written 4.7 years ago by ▴ 30
0
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0
replies
1.6k
views
Comment: C: GenomicFeatures promotersByOverlap: Identify promoters by overlap?
5.3 years ago vanbelj ▴ 30
2
votes
3
replies
1.6k
views
GenomicFeatures promotersByOverlap: Identify promoters by overlap?
GenomicFeatures GenomicRanges
updated 5.3 years ago by 68k • written 5.3 years ago by ▴ 30
0
votes
0
replies
1.9k
views
Comment: C: csaw: Error in path.expand(bam.file) : invalid 'path' argument
5.8 years ago vanbelj ▴ 30
6
votes
2
replies
1.9k
views
csaw: Error in path.expand(bam.file) : invalid 'path' argument
csaw software error
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 30
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