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sampling random regions of same nucleotide composition from hg38 genome
annotatr regioneR gkmSVM
updated 5 months ago by • 0 • written 3.3 years ago by ▴ 20
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1.1k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
5 months ago rohitsatyam102 ▴ 20
0
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0
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1.1k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
5 months ago rohitsatyam102 ▴ 20
0
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0
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1.1k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
5 months ago rohitsatyam102 ▴ 20
0
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0
replies
1.1k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
5 months ago rohitsatyam102 ▴ 20
0
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0
replies
1.1k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
5 months ago rohitsatyam102 ▴ 20
0
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1
reply
1.1k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
5 months ago rohitsatyam102 ▴ 20
0
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1
reply
439
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How to calculate CDS start and End per transcript from GTF file
dNdScv GenomicFeatures TxDb
5 months ago rohitsatyam102 ▴ 20
0
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0
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439
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Answer: Answer: How to calculate CDS start and End per transcript from GTF file
5 months ago rohitsatyam102 ▴ 20
2
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10
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1.1k
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Accounting for Batch effect reduces DEGs drastically
DESeq2
5 months ago rohitsatyam102 ▴ 20
0
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1
reply
956
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
21 months ago rohitsatyam102 ▴ 20
0
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0
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956
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Answer: Answer: GViz plot coverage for multiple chromosome and multiple samples using BAM files
21 months ago rohitsatyam102 ▴ 20
0
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0
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888
views
Comment: Comment: Unable to convert Uniprot ID to Gene IDs using Biomart
21 months ago rohitsatyam102 ▴ 20
3
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2
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888
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Unable to convert Uniprot ID to Gene IDs using Biomart
biomaRt
21 months ago rohitsatyam102 ▴ 20
0
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0
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1.7k
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Comment: Comment: Using SingleR for Single cell annotation with BulkRNASeq
23 months ago rohitsatyam102 ▴ 20
3
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4
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1.7k
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Using SingleR for Single cell annotation with BulkRNASeq
SingleR
2.0 years ago • updated 23 months ago rohitsatyam102 ▴ 20
0
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0
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955
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Comment: Comment: Aberrant number of cells
24 months ago rohitsatyam102 ▴ 20
1
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0
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1.7k
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Answer: Answer: Using SingleR for Single cell annotation with BulkRNASeq
2.0 years ago rohitsatyam102 ▴ 20
0
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0
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1.7k
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Comment: Comment: Using SingleR for Single cell annotation with BulkRNASeq
2.0 years ago rohitsatyam102 ▴ 20
0
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1
reply
1.5k
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Comment: Comment: How to shortlist the unaffected gene list from DESeq2 results
2.6 years ago rohitsatyam102 ▴ 20
0
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0
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1.7k
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Comment: Comment: Calculation of Log2 fold change in DEXSeq
2.6 years ago rohitsatyam102 ▴ 20
0
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1
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2.9k
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Comment: Comment: ntop parameter in plotPCA(). DESeq2
2.6 years ago rohitsatyam102 ▴ 20
1
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1
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1.6k
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Comment: Comment: How to calculate dispersion DESeq2 - Step by Step
2.7 years ago rohitsatyam102 ▴ 20
2
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1
reply
996
views
barcodeRanks unusual warning "In smooth.spline(x[new.keep], y[new.keep], df = df, ...)"
DropletUtils
updated 2.9 years ago by ★ 28k • written 2.9 years ago by ▴ 20
0
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1
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4.9k
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Comment: Comment: Error in conversion of SCE object to Seurat Object.
2.9 years ago rohitsatyam102 ▴ 20
0
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0
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947
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Comment: Comment: Should we apply DropletUtils on control case separately or on a common sce objec
3.0 years ago rohitsatyam102 ▴ 20
2
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5
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4.9k
views
Error in conversion of SCE object to Seurat Object.
SingleCellExperiment
updated 2.9 years ago by ▴ 60 • written 3.0 years ago by ▴ 20
3
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2
replies
947
views
Should we apply DropletUtils on control case separately or on a common sce object.
DropletUtils
3.0 years ago rohitsatyam102 ▴ 20
0
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1
reply
4.9k
views
Comment: Comment: Error in conversion of SCE object to Seurat Object.
3.0 years ago rohitsatyam102 ▴ 20
0
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1
reply
1.4k
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Comment: Comment: How to save multiple assays and subsequent processed data in single SummarizedEx
3.0 years ago rohitsatyam102 ▴ 20
0
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0
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1.4k
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Comment: Comment: How to save multiple assays and subsequent processed data in single SummarizedEx
3.0 years ago rohitsatyam102 ▴ 20
4
votes
4
replies
1.4k
views
How to save multiple assays and subsequent processed data in single SummarizedExperiment Object
SummarizedExperiment
updated 3.0 years ago by 1.6k • written 3.0 years ago by ▴ 20
0
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0
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4.2k
views
Comment: Comment: Convert Agilent Probe ID to gene IDs/Symbols
3.1 years ago rohitsatyam102 ▴ 20
0
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3
replies
4.2k
views
Convert Agilent Probe ID to gene IDs/Symbols
AnnotationHub biomaRt
updated 20 months ago by • 0 • written 3.1 years ago by ▴ 20
11
votes
13
replies
4.0k
views
How to retrieve genomic coordinates for a list of entrezID and their respective gene names
genomic AnnotationHub GenomicRanges org.Hs.eg.db
3.4 years ago • updated 3.2 years ago rohitsatyam102 ▴ 20
0
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0
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4.0k
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Answer: Answer: How to retrieve genomic coordinates for a list of entrezID and their respective
3.2 years ago rohitsatyam102 ▴ 20
0
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0
replies
4.9k
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Comment: Comment: error while installing " BSgenome.Hsapiens.UCSC.hg19"
3.2 years ago rohitsatyam102 ▴ 20
1
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2
replies
3.1k
views
Error while Installing BSgenome.Hsapiens.UCSC.hg38
BSgenome.Hsapiens.UCSC.hg38
updated 3.2 years ago by ▴ 10 • written 3.3 years ago by ▴ 20
0
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1
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3.1k
views
Answer: Answer: Error while Installing BSgenome.Hsapiens.UCSC.hg38
3.3 years ago rohitsatyam102 ▴ 20
0
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1
reply
4.0k
views
Comment: Comment: How to retrieve genomic coordinates for a list of entrezID and their respective
3.4 years ago rohitsatyam102 ▴ 20
0
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1
reply
4.0k
views
Comment: Comment: How to retrieve genomic coordinates for a list of entrezID and their respective
3.4 years ago rohitsatyam102 ▴ 20
1
vote
0
replies
1.7k
views
Comment: Comment: Understanding DESeq2 contrasts and p-values
3.4 years ago rohitsatyam102 ▴ 20
8
votes
8
replies
1.5k
views
How to shortlist the unaffected gene list from DESeq2 results
DESeq2
updated 2.6 years ago by 41k • written 3.5 years ago by ▴ 20
0
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1
reply
1.5k
views
Comment: Comment: How to shortlist the unaffected gene list from DESeq2 results
3.4 years ago rohitsatyam102 ▴ 20
0
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0
replies
3.9k
views
Comment: Comment: DEXSeq: question about usage coefficient and splicing plot
3.4 years ago rohitsatyam102 ▴ 20
0
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0
replies
1.5k
views
Comment: Comment: Interpreting the EstimateDispersion plot from the DEXSeq package
3.4 years ago rohitsatyam102 ▴ 20
0
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1
reply
1.2k
views
Comment: Comment: DEXSeq - what is the best way to filter out low expressed exons / genes?
3.4 years ago rohitsatyam102 ▴ 20
6
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7
replies
1.7k
views
Strategy to perform DESeq, DEXSeq workflow
DEXSeq DESeq2
updated 3.3 years ago by 41k • written 3.5 years ago by ▴ 20
0
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1
reply
1.7k
views
Comment: Comment: Strategy to perform DESeq, DEXSeq workflow
3.5 years ago rohitsatyam102 ▴ 20
0
votes
1
reply
1.5k
views
Comment: Comment: How to shortlist the unaffected gene list from DESeq2 results
3.5 years ago rohitsatyam102 ▴ 20
58 results • Page 1 of 2
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