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3
votes
8
replies
1.3k
views
findSpliceOverlaps Buffer Error
GenomicAlignments findSpliceOverlaps
updated 7.5 years ago by 16k • written 7.5 years ago by ★ 1.5k
2
votes
2
replies
726
views
Class for Storing Chimeric Reads
GenomicAlignments chimeric
updated 7.5 years ago by ★ 6.8k • written 7.5 years ago by ★ 1.5k
2
votes
2
replies
2.8k
views
featureCounts Parameters for Exon Junctions
rsubread featureCounts
updated 7.5 years ago by ★ 3.6k • written 7.5 years ago by ★ 1.5k
6
votes
13
replies
2.0k
views
Comparison of Column of AnnotatedDataFrame
biobase AnnotatedDataFrame
7.6 years ago Dario Strbenac ★ 1.5k
1
vote
2
replies
1.5k
views
Counting Distinct Mapped Reads in BAM File of Paired-end Sequencing
rsamtools paired-end reads countbam
updated 7.6 years ago by 25k • written 7.6 years ago by ★ 1.5k
0
votes
0
replies
781
views
Inconsistent Missing Values When Importing GFF3
rtracklayer NA
7.7 years ago Dario Strbenac ★ 1.5k
3
votes
2
replies
972
views
select With Regular Expression
annotationdbi Wildcard
updated 7.9 years ago by ★ 2.0k • written 7.9 years ago by ★ 1.5k
4
votes
5
replies
1.6k
views
Warning About isobar Incorrect Calculation And Lack of Maintenance
isobar Shovelware
updated 8.2 years ago by ▴ 20 • written 8.5 years ago by ★ 1.5k
0
votes
0
replies
1.1k
views
Inappropriate Statistical Models for Agilent microRNA Microarray Data
agimicrorna linear model
8.2 years ago Dario Strbenac ★ 1.5k
4
votes
1
reply
1.6k
views
Converting Protein Accessions Into Protein Symbols
uniprot uniprot.ws
8.2 years ago Dario Strbenac ★ 1.5k
5
votes
7
replies
1.3k
views
Concatenation of Bimap
AnnotationDbi Concatenate
updated 8.5 years ago by 65k • written 8.5 years ago by ★ 1.5k
2
votes
4
replies
1.3k
views
vcountPattern for Pattern Contained within or Containing Subject
biostrings countpattern
8.5 years ago Dario Strbenac ★ 1.5k
2
votes
1
reply
1.2k
views
naiveRandRUV Error When k is 1
RUVNormalize Subsetting
updated 8.9 years ago by ▴ 10 • written 9.0 years ago by ★ 1.5k
0
votes
5
replies
2.2k
views
makeTranscriptDbFromGFF Error for UCSC GTF File
GenomicFeatures GenomicFeatures
updated 9.9 years ago by ★ 7.2k • written 9.9 years ago by ★ 1.5k
0
votes
3
replies
1.5k
views
MLSeq Mathematical Concepts
Classification edgeR DESeq MLSeq Classification edgeR DESeq MLSeq
updated 10.1 years ago by ★ 13k • written 10.1 years ago by ★ 1.5k
0
votes
0
replies
995
views
Repitools - featureScores - mappability Bsgenome object
BSgenome BSgenome Repitools BSgenome BSgenome Repitools
10.2 years ago Dario Strbenac ★ 1.5k
0
votes
1
reply
1.5k
views
BigWig Import by Chromosome
updated 10.2 years ago by 25k • written 10.2 years ago by ★ 1.5k
0
votes
0
replies
1.0k
views
EBSeq Results Affected By Outlying Values
EBSeq EBSeq
10.3 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
650
views
RankProd Result for One Class Analysis
10.7 years ago Dario Strbenac ★ 1.5k
0
votes
3
replies
1.2k
views
Annotate blastSequences Returns No Result
annotate annotate
updated 10.8 years ago by 25k • written 10.8 years ago by ★ 1.5k
0
votes
2
replies
3.7k
views
TranscriptDb of GENCODE Genes
Transcription Annotation Transcription Annotation
updated 10.8 years ago by ★ 7.2k • written 10.8 years ago by ★ 1.5k
2
votes
1
reply
1.1k
views
TopGO 0 nontrivial nodes
topGO topGO
10.8 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
570
views
Turning a GRanges Metadata Column into Rle List
11.0 years ago Dario Strbenac ★ 1.5k
0
votes
4
replies
2.0k
views
makeTranscriptDbFromGFF for Unstranded Transcripts
TranscriptDb TranscriptDb
updated 11.0 years ago by 16k • written 11.0 years ago by ★ 1.5k
0
votes
3
replies
1.1k
views
Migrating a Large BSgenome Package to R 3.0
BSgenome BSgenome BSgenome BSgenome
updated 11.0 years ago by 16k • written 11.0 years ago by ★ 1.5k
0
votes
0
replies
2.7k
views
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : line 1 did not have 4 elements
Pathways Pathways
11.1 years ago Dario Strbenac ★ 1.5k
0
votes
10
replies
1.7k
views
Calculate Outer Positions of GappedAlignmentPairs
Coverage GenomicRanges Coverage GenomicRanges
updated 11.2 years ago by ★ 11k • written 11.2 years ago by ★ 1.5k
0
votes
0
replies
637
views
downloading a conservation track with rtracklayer on several chromosome seqs
rtracklayer rtracklayer
11.2 years ago Dario Strbenac ★ 1.5k
0
votes
11
replies
3.4k
views
Turning a GRanges Metadata Column into Rle List
updated 11.4 years ago by ▴ 40 • written 11.4 years ago by ★ 1.5k
0
votes
3
replies
763
views
GenomicFeatures Reading GFF Efficiency
11.5 years ago Dario Strbenac ★ 1.5k
0
votes
4
replies
981
views
GenomicFeatures Transcripts Retrieval Fails
11.6 years ago Dario Strbenac ★ 1.5k
0
votes
2
replies
467
views
Bimap Subsetting
updated 11.6 years ago by 16k • written 11.6 years ago by ★ 1.5k
0
votes
0
replies
732
views
Analyzing expression Affymetrix Hugene1.0.st array
qPCR qPCR
11.6 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
633
views
how to get a gene list for profilePlots in Repitools package
11.8 years ago Dario Strbenac ★ 1.5k
0
votes
1
reply
596
views
Rsamtools yieldTabix Skips Comment Lines
updated 12.0 years ago by 25k • written 12.0 years ago by ★ 1.5k
0
votes
1
reply
3.6k
views
GRanges Constructor With seqlengths
BSgenome BSgenome BSgenome BSgenome
12.0 years ago Dario Strbenac ★ 1.5k
0
votes
5
replies
874
views
Create A Stranded probeAnno Object
12.0 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
808
views
iSeq Peak Position
iSeq iSeq
12.0 years ago Dario Strbenac ★ 1.5k
0
votes
3
replies
730
views
tilingArray normalizeByReference Data Scaling
12.0 years ago Dario Strbenac ★ 1.5k
0
votes
3
replies
3.0k
views
Export a BigWig with rtracklayer
updated 12.1 years ago by ★ 11k • written 12.1 years ago by ★ 1.5k
0
votes
1
reply
923
views
RangedData Element Metadata
Coverage rtracklayer ASSIGN Coverage rtracklayer ASSIGN
updated 12.1 years ago by ★ 11k • written 12.1 years ago by ★ 1.5k
0
votes
0
replies
637
views
countOverlaps within Mode Counting
12.2 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
779
views
Limma normalizeBetweenArrays When Samples Have Different Distributions
12.2 years ago Dario Strbenac ★ 1.5k
0
votes
1
reply
964
views
limma barcodeplot with 2 groups
updated 12.3 years ago by 50k • written 12.3 years ago by ★ 1.5k
0
votes
10
replies
2.1k
views
GRanges setdiff With Features on Both Strands
updated 12.3 years ago by 16k • written 12.3 years ago by ★ 1.5k
0
votes
2
replies
1.1k
views
Rsamtools BAM File Opening Takes Long Time
updated 12.3 years ago by 25k • written 12.3 years ago by ★ 1.5k
0
votes
2
replies
521
views
scanBamHeader for File on Internet
12.4 years ago Dario Strbenac ★ 1.5k
0
votes
2
replies
1.1k
views
HTSanalyzeR GSEA Error
HTSanalyzeR GSCA HTSanalyzeR GSCA
updated 12.5 years ago by ▴ 10 • written 12.5 years ago by ★ 1.5k
0
votes
4
replies
1.1k
views
IlluminaHumanMethylation450k.db Reference Versions
12.5 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
611
views
minfi F-test Results
12.5 years ago Dario Strbenac ★ 1.5k
109 results • Page 2 of 3
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